9230116N13Rik Gene Detail

Summary

• Symbol
  9230116N13Rik
• Name
  RIKEN cDNA 9230116N13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443255
  NCBI Gene: 320054
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:136339654-136343257 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 59.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  179 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443255	lncRNA gene	Chr1:136339654-136343257 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015114	unclassified non-coding RNA gene	Chr1:140242281-140245883 (-)
A/J	MGP_AJ_G0015087	unclassified non-coding RNA gene	Chr1:134920061-134923664 (-)
AKR/J	MGP_AKRJ_G0015050	unclassified non-coding RNA gene	Chr1:138927947-138931550 (-)
BALB/cJ	MGP_BALBcJ_G0015050	unclassified non-coding RNA gene	Chr1:135250634-135254237 (-)
C3H/HeJ	MGP_C3HHeJ_G0014873	unclassified non-coding RNA gene	Chr1:139028137-139031740 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015507	unclassified non-coding RNA gene	Chr1:145254399-145258002 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013253	unclassified non-coding RNA gene	Chr1:128033149-128036764 (-)
CAST/EiJ	MGP_CASTEiJ_G0014428	unclassified non-coding RNA gene	Chr1:138128066-138131672 (-)
CBA/J	MGP_CBAJ_G0014852	unclassified non-coding RNA gene	Chr1:150292175-150295778 (-)
DBA/2J	MGP_DBA2J_G0014945	unclassified non-coding RNA gene	Chr1:133912925-133916527 (-)
FVB/NJ	MGP_FVBNJ_G0014957	unclassified non-coding RNA gene	Chr1:132562913-132566516 (-)
LP/J	MGP_LPJ_G0015028	unclassified non-coding RNA gene	Chr1:141446265-141449868 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014984	unclassified non-coding RNA gene	Chr1:155920072-155923675 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015545	unclassified non-coding RNA gene	Chr1:138695822-138699425 (-)
PWK/PhJ	MGP_PWKPhJ_G0014220	unclassified non-coding RNA gene	Chr1:132965734-132969344 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014009	unclassified non-coding RNA gene	Chr1:137686201-137689824 (-)
WSB/EiJ	MGP_WSBEiJ_G0014531	unclassified non-coding RNA gene	Chr1:138738410-138742013 (-)

Homology

• Gene Tree
  9230116N13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  14
• Chemically induced (other)
  2
• Gene trapped
  11
• Radiation induced
  1
• Genomic Mutations
  3 involving 9230116N13Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000097403 (Evidence)
• NCBI Gene
  320054

Representative Sequences			Length	Strain/Species
genomic	320054	NCBI Gene Model | MGI Sequence Detail	3604	C57BL/6J
transcript	NR_024328	RefSeq | MGI Sequence Detail	2097	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 9230116N13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13941	Chr1:136343246-136343268 (-)	0 bp
Tssr13940	Chr1:136342695-136342718 (-)	550 bp