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D130017N08Rik Gene Detail
Summary
  • Symbol
    D130017N08Rik
  • Name
    RIKEN cDNA D130017N08 gene
  • Synonyms
    1700012G11Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2443273
    NCBI Gene: 320064
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:143744109-143750697 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 82.57 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    266 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443273
 lncRNA gene Chr5:143744093-143754330 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006851
 lincRNA gene Chr5:149119859-149131428 (+)
A/J MGP_AJ_G0006845
 lincRNA gene Chr5:142713907-142724206 (+)
AKR/J MGP_AKRJ_G0006815
 lincRNA gene Chr5:147174220-147184459 (+)
BALB/cJ MGP_BALBcJ_G0006821
 lincRNA gene Chr5:143958727-143969026 (+)
C3H/HeJ MGP_C3HHeJ_G0006766
 lincRNA gene Chr5:148001677-148013563 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006985
 lincRNA gene Chr5:154561083-154572891 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006237
 lincRNA gene Chr5:136476934-136487099 (+)
CAST/EiJ MGP_CASTEiJ_G0006685
 lincRNA gene Chr5:147514287-147524658 (+)
CBA/J MGP_CBAJ_G0006748
 lincRNA gene Chr5:160923327-160933548 (+)
DBA/2J MGP_DBA2J_G0006768
 lincRNA gene Chr5:142480991-142491290 (+)
FVB/NJ MGP_FVBNJ_G0006791
 lincRNA gene Chr5:141686737-141697036 (+)
LP/J MGP_LPJ_G0006851
 lincRNA gene Chr5:149725394-149735633 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006773
 lincRNA gene Chr5:163298682-163308981 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006988
 lincRNA gene Chr5:147042690-147052989 (+)
PWK/PhJ MGP_PWKPhJ_G0006627
 lincRNA gene Chr5:141576098-141588359 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006534
 lincRNA gene Chr5:144797483-144807470 (+)
WSB/EiJ MGP_WSBEiJ_G0006739
 lincRNA gene Chr5:147839513-147851400 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    33
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 320064 NCBI Gene Model | MGI Sequence Detail 6589 C57BL/6J ±  kb
transcript NR_015486 RefSeq | MGI Sequence Detail 1705 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
Other
Accession IDs
less
MGI:1923638
References
more
  • Summaries
    All 12
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory