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Slco5a1 Gene Detail
Summary
  • Symbol
    Slco5a1
  • Name
    solute carrier organic anion transporter family, member 5A1
  • Synonyms
    A630033C23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443431
    NCBI Gene: 240726
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:12936773-13062874 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 3.71 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4113 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443431
 protein coding gene Chr1:12936773-13063043 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015839
 protein coding gene Chr1:10204535-10337046 (-)
A/J MGP_AJ_G0015821
 protein coding gene Chr1:10206550-10324223 (-)
AKR/J MGP_AKRJ_G0015780
 protein coding gene Chr1:10103572-10227185 (-)
BALB/cJ MGP_BALBcJ_G0015777
 protein coding gene Chr1:9904739-10024917 (-)
C3H/HeJ MGP_C3HHeJ_G0015611
 protein coding gene Chr1:10084897-10210915 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016231
 protein coding gene Chr1:10709508-10849283 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013952
 protein coding gene Chr1:8831946-8959411 (-)
CAST/EiJ MGP_CASTEiJ_G0015191
 protein coding gene Chr1:10240446-10374683 (-)
CBA/J MGP_CBAJ_G0015584
 protein coding gene Chr1:10930824-11079685 (-)
DBA/2J MGP_DBA2J_G0015683
 protein coding gene Chr1:9804874-9924551 (-)
FVB/NJ MGP_FVBNJ_G0015688
 protein coding gene Chr1:9635142-9752519 (-)
LP/J MGP_LPJ_G0015755
 protein coding gene Chr1:10401922-10527598 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015707
 protein coding gene Chr1:11651007-11792313 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016278
 protein coding gene Chr1:10013598-10141553 (-)
PWK/PhJ MGP_PWKPhJ_G0014975
 protein coding gene Chr1:9613226-9743195 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014756
 protein coding gene Chr1:10237085-10360320 (-)
WSB/EiJ MGP_WSBEiJ_G0015255
 protein coding gene Chr1:10028127-10161437 (-)



Homology
more
  • Human Ortholog
    SLCO5A1, solute carrier organic anion transporter family member 5A1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLCO5A1, solute carrier organic anion transporter family member 5A1
  • Synonyms
    OATP5A1, OATP-J, OATPJ, OATP-RP4, OATPRP4, SLC21A15
  • Links
    NCBI Gene ID: 81796
    neXtProt AC: NX_Q9H2Y9
    UniProt: Q9H2Y9

  • Chr Location
    8q13.3; chr8:69667046-69834978 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    803
  • Tissues
    52
  • cDNA Data
    41
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025938 Ensembl Gene Model | MGI Sequence Detail 126102 C57BL/6J ±  kb
transcript ENSMUST00000188454 Ensembl | MGI Sequence Detail 8463 Not Applicable  
polypeptide ENSMUSP00000140091 Ensembl | MGI Sequence Detail 850 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 43
    cDNA 41
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:2138073
References
more
  • Summaries
    All 24
    Developmental Gene Expression 3
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory