A130050O07Rik MGI Mouse Gene Detail - MGI:2443458

Sequence Map

Chr1:137854989-137858011 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443458	lncRNA gene	Chr1:137854989-137858011 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000613	unclassified gene	Chr1:141925290-141928309 (+)
A/J	MGP_AJ_G0000587	unclassified gene	Chr1:136440824-136443844 (+)
AKR/J	MGP_AKRJ_G0000576	unclassified gene	Chr1:140532324-140535346 (+)
BALB/cJ	MGP_BALBcJ_G0000579	unclassified gene	Chr1:136772851-136775873 (+)
C3H/HeJ	MGP_C3HHeJ_G0000566	unclassified gene	Chr1:140634731-140637751 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000696	unclassified gene	Chr1:146918419-146921441 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000441	unclassified gene	Chr1:129494836-129497883 (+)
CAST/EiJ	MGP_CASTEiJ_G0000560	unclassified gene	Chr1:139787376-139790408 (+)
CBA/J	MGP_CBAJ_G0000557	unclassified gene	Chr1:151980733-151983753 (+)
DBA/2J	MGP_DBA2J_G0000561	unclassified gene	Chr1:135423893-135426916 (+)
FVB/NJ	MGP_FVBNJ_G0000575	unclassified gene	Chr1:134078945-134081964 (+)
LP/J	MGP_LPJ_G0000619	unclassified gene	Chr1:143037075-143040097 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000570	unclassified gene	Chr1:157630428-157633447 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000688	unclassified gene	Chr1:140305574-140308596 (+)
PWK/PhJ	MGP_PWKPhJ_G0000512	unclassified gene	Chr1:134510379-134513545 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000488	unclassified gene	Chr1:139293099-139296115 (+)
WSB/EiJ	MGP_WSBEiJ_G0000563	unclassified gene	Chr1:140335428-140338450 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	ENSMUSG00000102277	Ensembl Gene Model \| MGI Sequence Detail	3023	C57BL/6J	± kb
transcript	AK037803	GenBank \| ENA \| DDBJ \| MGI Sequence Detail	2970	C57BL/6J
polypeptide	Q8CAR5	UniProt \| EBI \| MGI Sequence Detail	110	Not Applicable

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Summaries

All 10
Earliest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A130050O07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9121	Chr1:137855838-137855873 (+)	867 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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