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Smim10l2a Gene Detail
Summary
  • Symbol
    Smim10l2a
  • Name
    small integral membrane protein 10 like 2A
  • Synonyms
    6330419J24Rik, 6330419J24Rik, Ncrna00086
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443645
    NCBI Gene: 320237
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:55419946-55423159 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 30.06 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    114 from dbSNP Build 142
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443645
 protein coding gene ChrX:55419877-55423830 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035733
 protein coding gene ChrX:51658262-51661919 (+)
A/J MGP_AJ_G0035716
 protein coding gene ChrX:51854344-51858444 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0035703
 protein coding gene ChrX:51326937-51330276 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0036232
 protein coding gene ChrX:53038793-53041900 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033084
 protein coding gene ChrX:51310228-51313494 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0035380
 protein coding gene ChrX:54564149-54569806 (+)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0035484
 protein coding gene ChrX:51054793-51063162 (+)
LP/J MGP_LPJ_G0035623
 protein coding gene ChrX:52248857-52251516 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    SMIM10L2A, small integral membrane protein 10 like 2A
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM10L2A, small integral membrane protein 10 like 2A
  • Synonyms
    LED, LINC00086, LINC00087, LINC0086, NCRNA00086, NCRNA00087, SMIM10L2B
  • Links
    NCBI Gene ID: 399668
    neXtProt AC: NX_P0DMW4, NX_P0DMW5
    UniProt: P0DMW4

  • Chr Location
    Xq26.3; chrX:135421944-135428075 (+)  GRCh38
  • Human Ortholog
    SMIM10L2B, small integral membrane protein 10 like 2B
  • Synonyms
    LINC00086, LINC00087, NCRNA00086, NCRNA00087, SMIM10L2A
  • Links
    NCBI Gene ID: 644596
    neXtProt AC: NX_P0DMW4, NX_P0DMW5
    UniProt: P0DMW5

  • Chr Location
    Xq26.3; chrX:135094985-135098712 (-)  GRCh38
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000054850 Ensembl Gene Model | MGI Sequence Detail 3214 C57BL/6J ±  kb
transcript ENSMUST00000068106 Ensembl | MGI Sequence Detail 2393 Not Applicable  
polypeptide ENSMUSP00000066705 Ensembl | MGI Sequence Detail 78 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR029367 Small integral membrane protein 10
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 2
References
more
  • Summaries
    All 16
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:321899 Park H, et al., Non-coding RNA Neat1 and Abhd11os expressions are dysregulated in medium spiny neurons of Huntington disease model mice. Neurosci Res. 2019 Oct;147:58-63
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory