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Fbxo40 Gene Detail
Summary
  • Symbol
    Fbxo40
  • Name
    F-box protein 40
  • Synonyms
    9830003A13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443753
    NCBI Gene: 207215
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:36783822-36810829 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 26.32 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    601 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443753
 protein coding gene Chr16:36783822-36811321 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022797
 protein coding gene Chr16:35386964-35407637 (-)
A/J MGP_AJ_G0022762
 protein coding gene Chr16:33644175-33669443 (-)
AKR/J MGP_AKRJ_G0022734
 protein coding gene Chr16:34928460-34949855 (-)
BALB/cJ MGP_BALBcJ_G0022763
 protein coding gene Chr16:33747961-33770358 (-)
C3H/HeJ MGP_C3HHeJ_G0022527
 protein coding gene Chr16:35046185-35067890 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023210
 protein coding gene Chr16:36228931-36254306 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020724
 protein coding gene Chr16:34008457-34029525 (-)
CAST/EiJ MGP_CASTEiJ_G0022053
 protein coding gene Chr16:35171579-35192380 (-)
CBA/J MGP_CBAJ_G0022498
 protein coding gene Chr16:37807182-37835974 (-)
DBA/2J MGP_DBA2J_G0022630
 protein coding gene Chr16:33539741-33560835 (-)
FVB/NJ MGP_FVBNJ_G0022605
 protein coding gene Chr16:33569977-33596688 (-)
LP/J MGP_LPJ_G0022698
 protein coding gene Chr16:35091934-35117312 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022624
 protein coding gene Chr16:36869083-36906139 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023225
 protein coding gene Chr16:34876892-34899669 (-)
PWK/PhJ MGP_PWKPhJ_G0021793
 protein coding gene Chr16:33941559-33963101 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021624
 protein coding gene Chr16:34794870-34819167 (-)
WSB/EiJ MGP_WSBEiJ_G0022097
 protein coding gene Chr16:34935814-34961365 (-)



Homology
more
  • Human Ortholog
    FBXO40, F-box protein 40
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FBXO40, F-box protein 40
  • Synonyms
    FBX40
  • Links
    NCBI Gene ID: 51725
    neXtProt AC: NX_Q9UH90
    UniProt: Q9UH90

  • Chr Location
    3q13.33; chr3:121593379-121630295 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    1
  • cDNA Data
    9
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000047746 Ensembl Gene Model | MGI Sequence Detail 27008 C57BL/6J ±  kb
transcript ENSMUST00000075869 Ensembl | MGI Sequence Detail 5137 Not Applicable  
polypeptide ENSMUSP00000075266 Ensembl | MGI Sequence Detail 710 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 9
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:236440 You L, et al., The chromatin regulator Brpf1 regulates embryo development and cell proliferation. J Biol Chem. 2015 May 1;290(18):11349-64
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory