Mir181a-1hg Gene Detail

Summary

• Symbol
  Mir181a-1hg
• Name
  Mir181a-1 and Mir181b-1 host gene
• Synonyms
  A430106G13Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2443823
  NCBI Gene: 320327
• Alliance
  gene page
• Transcription Start Sites
  23 TSS

Location &
Maps

• Sequence Map
  Chr1:137826192-137937516 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2920 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443823	lncRNA gene	Chr1:137826192-137937516 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004985	lincRNA gene	Chr1:141968404-141971789 (+)
A/J	MGP_AJ_G0004967	lincRNA gene	Chr1:136480136-136483553 (+)
AKR/J	MGP_AKRJ_G0004944	lincRNA gene	Chr1:140576136-140579521 (+)
BALB/cJ	MGP_BALBcJ_G0004948	lincRNA gene	Chr1:136812829-136816216 (+)
C3H/HeJ	MGP_C3HHeJ_G0004897	lincRNA gene	Chr1:140676544-140679947 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005098	lincRNA gene	Chr1:146957678-146961047 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004513	lincRNA gene	Chr1:129534585-129537941 (+)
CAST/EiJ	MGP_CASTEiJ_G0004846	lincRNA gene	Chr1:139832838-139836196 (+)
CBA/J	MGP_CBAJ_G0004888	lincRNA gene	Chr1:152026361-152029774 (+)
DBA/2J	MGP_DBA2J_G0004908	lincRNA gene	Chr1:135463343-135466742 (+)
FVB/NJ	MGP_FVBNJ_G0004927	lincRNA gene	Chr1:134119009-134122406 (+)
LP/J	MGP_LPJ_G0004985	lincRNA gene	Chr1:143076872-143080259 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004912	lincRNA gene	Chr1:157687680-157693978 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005103	lincRNA gene	Chr1:140346199-140349586 (+)
PWK/PhJ	MGP_PWKPhJ_G0004798	lincRNA gene	Chr1:134551029-134555196 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004723	lincRNA gene	Chr1:139330792-139337918 (+)
WSB/EiJ	MGP_WSBEiJ_G0004893	lincRNA gene	Chr1:140377683-140381088 (+)

Homology

• Gene Tree
  Mir181a-1hg
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Endonuclease-mediated
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Mir181a-1hg
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  64

• Ensembl
  ENSMUSG00000098206 (Evidence)
• NCBI Gene
  320327

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098206	Ensembl Gene Model | MGI Sequence Detail	111325	C57BL/6J
transcript	ENSMUST00000193770	Ensembl | MGI Sequence Detail	3868	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:6324227

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for Mir181a-1hg:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9105	Chr1:137828918-137828928 (+)	2,731 bp
Tssr9106	Chr1:137833768-137833797 (+)	7,591 bp
Tssr9107	Chr1:137833824-137833835 (+)	7,638 bp
Tssr9108	Chr1:137834499-137834508 (+)	8,312 bp
Tssr9109	Chr1:137834521-137834530 (+)	8,334 bp
Tssr9110	Chr1:137834543-137834563 (+)	8,361 bp
Tssr9111	Chr1:137834581-137834595 (+)	8,396 bp
Tssr9112	Chr1:137834764-137834765 (+)	8,573 bp
Tssr9113	Chr1:137836650-137836687 (+)	10,477 bp
Tssr9114	Chr1:137840591-137840596 (+)	14,402 bp
Tssr9115	Chr1:137844311-137844318 (+)	18,123 bp
Tssr9116	Chr1:137846511-137846519 (+)	20,323 bp
Tssr9117	Chr1:137848421-137848432 (+)	22,235 bp
Tssr9118	Chr1:137848625-137848638 (+)	22,440 bp
Tssr9122	Chr1:137859485-137859502 (+)	33,302 bp
Tssr9123	Chr1:137859523-137859534 (+)	33,337 bp
Tssr9124	Chr1:137859590-137859601 (+)	33,404 bp
Tssr9126	Chr1:137870894-137870926 (+)	44,718 bp
Tssr9127	Chr1:137873743-137873747 (+)	47,553 bp
Tssr9130	Chr1:137889208-137889215 (+)	63,020 bp
Tssr232	Chr1:137894534-137894537 (+)	68,344 bp
Tssr9134	Chr1:137895491-137895500 (+)	69,304 bp
Tssr9138	Chr1:137902369-137902377 (+)	76,181 bp