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Samd10 Gene Detail
Summary
  • Symbol
    Samd10
  • Name
    sterile alpha motif domain containing 10
  • Synonyms
    D930033N23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443872
    NCBI Gene: 229011
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:181237011-181241005 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 103.67 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    88 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443872
 protein coding gene Chr2:181237008-181241227 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027031
 protein coding gene Chr2:188206733-188210727 (-)
A/J MGP_AJ_G0026997
 protein coding gene Chr2:180447169-180451163 (-)
AKR/J MGP_AKRJ_G0026967
 protein coding gene Chr2:185860947-185864941 (-)
BALB/cJ MGP_BALBcJ_G0027005
 protein coding gene Chr2:180926966-180930960 (-)
C3H/HeJ MGP_C3HHeJ_G0026747
 protein coding gene Chr2:186209500-186213494 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027451
 protein coding gene Chr2:193652897-193656891 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024815
 protein coding gene Chr2:171130470-171134700 (-)
CAST/EiJ MGP_CASTEiJ_G0026206
 protein coding gene Chr2:184481179-184485173 (-)
CBA/J MGP_CBAJ_G0026724
 protein coding gene Chr2:200650749-200654743 (-)
DBA/2J MGP_DBA2J_G0026861
 protein coding gene Chr2:179549096-179553090 (-)
FVB/NJ MGP_FVBNJ_G0026827
 protein coding gene Chr2:178168523-178172517 (-)
LP/J MGP_LPJ_G0026963
 protein coding gene Chr2:188228299-188232293 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026847
 protein coding gene Chr2:203215121-203219115 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027511
 protein coding gene Chr2:185831655-185835649 (-)
PWK/PhJ MGP_PWKPhJ_G0025942
 protein coding gene Chr2:177075117-177079120 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025742
 protein coding gene Chr2:182332585-182336576 (-)
WSB/EiJ MGP_WSBEiJ_G0026278
 protein coding gene Chr2:186815243-186819239 (-)



Homology
more
  • Human Ortholog
    SAMD10, sterile alpha motif domain containing 10
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SAMD10, sterile alpha motif domain containing 10
  • Synonyms
    C20orf136, dJ591C20, dJ591C20.7
  • Links
    NCBI Gene ID: 140700
    neXtProt AC: NX_Q9BYL1
    UniProt: Q9BYL1

  • Chr Location
    20q13.33; chr20:63974116-63980144 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    797
  • Tissues
    14
  • cDNA Data
    35
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038605 Ensembl Gene Model | MGI Sequence Detail 3995 C57BL/6J ±  kb
transcript ENSMUST00000060173 Ensembl | MGI Sequence Detail 2164 Not Applicable  
polypeptide ENSMUSP00000060499 Ensembl | MGI Sequence Detail 202 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 35
    cDNA 35

    Microarray probesets 1
References
more
  • Summaries
    All 18
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory