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C130075A20Rik Gene Detail
Summary
  • Symbol
    C130075A20Rik
  • Name
    RIKEN cDNA C130075A20 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2443940
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr3:53006421-53010596 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, Syntenic
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    218 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443940
 lncRNA gene Chr3:53006421-53010596 (+)
129S1/SvImJ MGP_129S1SvImJ_G0001154
 unclassified gene Chr3:51680874-51685049 (+)
A/J MGP_AJ_G0001134
 unclassified gene Chr3:50130435-50134610 (+)
AKR/J MGP_AKRJ_G0001120
 unclassified gene Chr3:51142310-51146485 (+)
BALB/cJ MGP_BALBcJ_G0001127
 unclassified gene Chr3:50007152-50011327 (+)
C3H/HeJ MGP_C3HHeJ_G0001108
 unclassified gene Chr3:51378744-51382919 (+)
C57BL/6NJ MGP_C57BL6NJ_G0001242
 unclassified gene Chr3:53679714-53683889 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0000960
 unclassified gene Chr3:46727395-46731579 (+)
CAST/EiJ MGP_CASTEiJ_G0001091
 unclassified gene Chr3:51463357-51467534 (+)
CBA/J MGP_CBAJ_G0001099
 unclassified gene Chr3:55388916-55393091 (+)
DBA/2J MGP_DBA2J_G0001103
 unclassified gene Chr3:49718486-49722661 (+)
FVB/NJ MGP_FVBNJ_G0001114
 unclassified gene Chr3:48699300-48703475 (+)
LP/J MGP_LPJ_G0001162
 unclassified gene Chr3:52421720-52425895 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0001103
 unclassified gene Chr3:59525145-59529320 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0001233
 unclassified gene Chr3:51056263-51060438 (+)
PWK/PhJ MGP_PWKPhJ_G0001049
 unclassified gene Chr3:49380445-49384642 (+)
SPRET/EiJ MGP_SPRETEiJ_G0001025
 unclassified gene Chr3:50776864-50781049 (+)
WSB/EiJ MGP_WSBEiJ_G0001107
 unclassified gene Chr3:51168776-51172962 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    730
  • Tissues
    24
  • cDNA Data
    3
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    22
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000104735 Ensembl Gene Model | MGI Sequence Detail 4176 C57BL/6J ±  kb
transcript AK085840 GenBank | ENA | DDBJ | MGI Sequence Detail 3711 C57BL/6J  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
Other
Accession IDs
less
MGI:3035486
References
more
  • Summaries
    All 8
    Developmental Gene Expression 1
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory