Foxd2os Gene Detail

Summary

• Symbol
  Foxd2os
• Name
  forkhead box D2, opposite strand
• Synonyms
  9130206I24Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2444065
  NCBI Gene: 100040736
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:114766454-114778315 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 52.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  342 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444065	lncRNA gene	Chr4:114766424-114779164 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015568	unclassified non-coding RNA gene	Chr4:115665971-115681206 (+)
A/J	MGP_AJ_G0015545	unclassified non-coding RNA gene	Chr4:111252126-111265759 (+)
AKR/J	MGP_AKRJ_G0015509	unclassified non-coding RNA gene	Chr4:113555039-113569758 (+)
BALB/cJ	MGP_BALBcJ_G0015507	unclassified non-coding RNA gene	Chr4:111893913-111907526 (+)
C3H/HeJ	MGP_C3HHeJ_G0015329	unclassified non-coding RNA gene	Chr4:115171458-115184564 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015960	unclassified non-coding RNA gene	Chr4:120142296-120157394 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013696	unclassified non-coding RNA gene	Chr4:105353859-105366222 (+)
CAST/EiJ	MGP_CASTEiJ_G0014884	unclassified non-coding RNA gene	Chr4:112591390-112603696 (+)
CBA/J	MGP_CBAJ_G0015310	unclassified non-coding RNA gene	Chr4:123249661-123262300 (+)
DBA/2J	MGP_DBA2J_G0015404	unclassified non-coding RNA gene	Chr4:111900601-111913471 (+)
FVB/NJ	MGP_FVBNJ_G0015411	unclassified non-coding RNA gene	Chr4:110367121-110383673 (+)
LP/J	MGP_LPJ_G0015484	unclassified non-coding RNA gene	Chr4:115872224-115884919 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015434	unclassified non-coding RNA gene	Chr4:128400615-128414255 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016002	unclassified non-coding RNA gene	Chr4:114800461-114816119 (+)
PWK/PhJ	MGP_PWKPhJ_G0014669	unclassified non-coding RNA gene	Chr4:108686676-108699443 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014458	unclassified non-coding RNA gene	Chr4:111191396-111203689 (+)
WSB/EiJ	MGP_WSBEiJ_G0014989	unclassified non-coding RNA gene	Chr4:114586314-114600304 (+)

Homology

• Gene Tree
  Foxd2os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Foxd2os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  708
• Tissues
  1
• cDNA Data
  15
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000085399 (Evidence)
• NCBI Gene
  100040736

Representative Sequences			Length	Strain/Species
genomic	100040736	NCBI Gene Model | MGI Sequence Detail	11862	C57BL/6J
transcript	NR_030721	RefSeq | MGI Sequence Detail	2908	C57BL/6

Molecular
Reagents

• All nucleic 16

  cDNA 15

  Other 1

  
  

  Microarray probesets 1

References

• Summaries
  All 21

  Developmental Gene Expression 2

  Phenotypes 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:346374 Ushiki A, et al., Deletion of Pax1 scoliosis-associated regulatory elements leads to a female-biased tail abnormality. Cell Rep. 2024 Mar 8;43(3):113907

TSS for Foxd2os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38420	Chr4:114766449-114766466 (+)	4 bp
Tssr38421	Chr4:114766468-114766519 (+)	40 bp
Tssr38422	Chr4:114767041-114767045 (+)	589 bp