E030042O20Rik Gene Detail

Summary

• Symbol
  E030042O20Rik
• Name
  RIKEN cDNA E030042O20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444099
  NCBI Gene: 320474
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:75535114-75546239 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 44.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  407 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444099	lncRNA gene	Chr2:75535114-75548841 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015430	unclassified non-coding RNA gene	Chr2:76071063-76078034 (+)
A/J	MGP_AJ_G0015405	unclassified non-coding RNA gene	Chr2:73092944-73098222 (+)
AKR/J	MGP_AKRJ_G0015369	unclassified non-coding RNA gene	Chr2:75064999-75070253 (+)
BALB/cJ	MGP_BALBcJ_G0015369	unclassified non-coding RNA gene	Chr2:73284380-73289646 (+)
C3H/HeJ	MGP_C3HHeJ_G0015193	unclassified non-coding RNA gene	Chr2:75269219-75274494 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015823	unclassified non-coding RNA gene	Chr2:78338667-78343921 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013563	unclassified non-coding RNA gene	Chr2:70509565-70514832 (+)
CAST/EiJ	MGP_CASTEiJ_G0014744	unclassified non-coding RNA gene	Chr2:75592279-75597505 (+)
CBA/J	MGP_CBAJ_G0015172	unclassified non-coding RNA gene	Chr2:81194527-81199802 (+)
DBA/2J	MGP_DBA2J_G0015267	unclassified non-coding RNA gene	Chr2:72689101-72694366 (+)
FVB/NJ	MGP_FVBNJ_G0015274	unclassified non-coding RNA gene	Chr2:72077724-72082970 (+)
LP/J	MGP_LPJ_G0015347	unclassified non-coding RNA gene	Chr2:75923855-75929110 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015300	unclassified non-coding RNA gene	Chr2:83087232-83092494 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015862	unclassified non-coding RNA gene	Chr2:75195563-75200795 (+)
PWK/PhJ	MGP_PWKPhJ_G0014532	unclassified non-coding RNA gene	Chr2:72650541-72655757 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014320	unclassified non-coding RNA gene	Chr2:75429598-75434982 (+)
WSB/EiJ	MGP_WSBEiJ_G0014851	unclassified non-coding RNA gene	Chr2:75650995-75656218 (+)

Homology

• Gene Tree
  E030042O20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  3
• Targeted
  2
• Genomic Mutations
  3 involving E030042O20Rik
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000087222 (Evidence)
• NCBI Gene
  320474

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087222	Ensembl Gene Model | MGI Sequence Detail	11126	C57BL/6J
transcript	ENSMUST00000244805	Ensembl | MGI Sequence Detail	1992	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 7
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for E030042O20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18461	Chr2:75534473-75534484 (+)	-635 bp
Tssr18462	Chr2:75535195-75535224 (+)	96 bp
Tssr18463	Chr2:75545388-75545393 (+)	10,277 bp