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Rccd1 Gene Detail
Summary
  • Symbol
    Rccd1
  • Name
    RCC1 domain containing 1
  • Synonyms
    E430018M08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444156
    NCBI Gene: 269955
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:79944339-79974512 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 45.64 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1041 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444156
 protein coding gene Chr7:79942977-79974512 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032409
 protein coding gene Chr7:82262789-82295950 (-)
A/J MGP_AJ_G0032388
 protein coding gene Chr7:80336445-80368573 (-)
AKR/J MGP_AKRJ_G0032324
 protein coding gene Chr7:82074321-82107385 (-)
BALB/cJ MGP_BALBcJ_G0032400
 protein coding gene Chr7:80013214-80043910 (-)
C3H/HeJ MGP_C3HHeJ_G0032113
 protein coding gene Chr7:82724007-82758834 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032892
 protein coding gene Chr7:85483041-85516362 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029900
 protein coding gene Chr7:82856868-82888233 (-)
CAST/EiJ MGP_CASTEiJ_G0031441
 protein coding gene Chr7:73608746-73642652 (-)
CBA/J MGP_CBAJ_G0032079
 protein coding gene Chr7:88333875-88368153 (-)
DBA/2J MGP_DBA2J_G0032234
 protein coding gene Chr7:78895232-78926372 (-)
FVB/NJ MGP_FVBNJ_G0032189
 protein coding gene Chr7:78807986-78838814 (-)
LP/J MGP_LPJ_G0032315
 protein coding gene Chr7:83500791-83534317 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032226
 protein coding gene Chr7:88490474-88525535 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0032910
 protein coding gene Chr7:81508174-81542671 (-)
PWK/PhJ MGP_PWKPhJ_G0031161
 protein coding gene Chr7:72080178-72111872 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031002
 protein coding gene Chr7:68515283-68550057 (-)
WSB/EiJ MGP_WSBEiJ_G0031559
 protein coding gene Chr7:81862679-81900441 (-)



Homology
more
  • Human Ortholog
    RCCD1, RCC1 domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RCCD1, RCC1 domain containing 1
  • Links
    NCBI Gene ID: 91433
    neXtProt AC: NX_A6NED2
    UniProt: A6NED2

  • Chr Location
    15q26.1; chr15:90954881-90963125 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    20 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    713
  • Tissues
    6
  • cDNA Data
    18
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 269955 NCBI Gene Model | MGI Sequence Detail 30174 C57BL/6J ±  kb
    transcript NM_173445 RefSeq | MGI Sequence Detail 2340 NOD  
    polypeptide Q8BTU7 UniProt | EBI | MGI Sequence Detail 377 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • Protein Ontology
      PR:000032361 RCC1 domain-containing protein 1
      (term hierarchy)
    • InterPro Domains
      IPR052830 RCC1 domain-containing protein
      IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
      IPR000408 Regulator of chromosome condensation, RCC1
    Molecular
    Reagents
    less
    • All nucleic 20
      Genomic 2
      cDNA 18

      Microarray probesets 3
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 1
      Gene Ontology 4
      Phenotypes 20
    • Earliest
      J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    10/29/2024
    MGI 6.24     		The Jackson Laboratory