9930022D16Rik Gene Detail

Summary

• Symbol
  9930022D16Rik
• Name
  RIKEN cDNA 9930022D16 gene

• Feature Type
  protein coding gene
• IDs
  MGI:2444178
  NCBI Gene: 320509
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:109304743-109311231 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 71.88 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  342 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444178	protein coding gene	Chr11:109304743-109311231 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0019332	protein coding gene	Chr11:112970186-112977904 (+)
A/J	MGP_AJ_G0019300	protein coding gene	Chr11:108083499-108089914 (+)
AKR/J	MGP_AKRJ_G0019269	protein coding gene	Chr11:111321948-111328326 (+)
BALB/cJ	MGP_BALBcJ_G0019274	protein coding gene	Chr11:108515183-108521659 (+)
C3H/HeJ	MGP_C3HHeJ_G0019083	protein coding gene	Chr11:111630274-111637442 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0019724	protein coding gene	Chr11:116390906-116398830 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0019052	protein coding gene	Chr11:121203508-121209910 (+)
DBA/2J	MGP_DBA2J_G0019164	protein coding gene	Chr11:107561329-107567710 (+)
FVB/NJ	MGP_FVBNJ_G0019155	protein coding gene	Chr11:107050914-107057543 (+)
LP/J	MGP_LPJ_G0019234	protein coding gene	Chr11:113380446-113388082 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019186	protein coding gene	Chr11:120349765-120357143 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0019761	protein coding gene	Chr11:111887645-111895567 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0018192	protein coding gene	Chr11:111662916-111669555 (+)
WSB/EiJ	MGP_WSBEiJ_G0018688	protein coding gene	Chr11:111809608-111818794 (+)

Homology

• Gene Tree
  9930022D16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• UniProt
  1

• Ensembl
  ENSMUSG00000045065 (Evidence)
• NCBI Gene
  320509

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045065	Ensembl Gene Model | MGI Sequence Detail	6489	C57BL/6J
transcript	ENSMUST00000055404	Ensembl | MGI Sequence Detail	2706	Not Applicable
polypeptide	ENSMUSP00000062888	Ensembl | MGI Sequence Detail	128	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for 9930022D16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105668	Chr11:109304735-109304753 (+)	1 bp