3632454L22Rik Gene Detail

Summary

• Symbol
  3632454L22Rik
• Name
  RIKEN cDNA 3632454L22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444359
  NCBI Gene: 320606
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:133923483-133961085 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 56.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  668 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444359	lncRNA gene	ChrX:133923159-133961085 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015792	unclassified non-coding RNA gene	ChrX:132226994-132249055 (-)
A/J	MGP_AJ_G0015767	unclassified non-coding RNA gene	ChrX:131678495-131716408 (-)
AKR/J	MGP_AKRJ_G0015730	unclassified non-coding RNA gene	ChrX:135881541-135919144 (-)
BALB/cJ	MGP_BALBcJ_G0015728	unclassified non-coding RNA gene	ChrX:130090593-130112369 (-)
C3H/HeJ	MGP_C3HHeJ_G0015549	unclassified non-coding RNA gene	ChrX:132310801-132336936 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016183	unclassified non-coding RNA gene	ChrX:136117828-136141333 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013906	unclassified non-coding RNA gene	ChrX:123810431-123848509 (-)
CAST/EiJ	MGP_CASTEiJ_G0015105	unclassified non-coding RNA gene	ChrX:113171718-113193464 (-)
CBA/J	MGP_CBAJ_G0015528	unclassified non-coding RNA gene	ChrX:140227348-140254117 (-)
DBA/2J	MGP_DBA2J_G0015627	unclassified non-coding RNA gene	ChrX:130953822-130975523 (-)
FVB/NJ	MGP_FVBNJ_G0015632	unclassified non-coding RNA gene	ChrX:130287213-130311980 (-)
LP/J	MGP_LPJ_G0015709	unclassified non-coding RNA gene	ChrX:133140127-133178918 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015655	unclassified non-coding RNA gene	ChrX:147605935-147627914 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016228	unclassified non-coding RNA gene	ChrX:131674690-131712234 (-)
PWK/PhJ	MGP_PWKPhJ_G0014887	unclassified non-coding RNA gene	ChrX:110113913-110135894 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014673	unclassified non-coding RNA gene	ChrX:113848257-113869155 (-)
WSB/EiJ	MGP_WSBEiJ_G0015208	unclassified non-coding RNA gene	ChrX:130040274-130062555 (-)

Homology

• Gene Tree
  3632454L22Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving 3632454L22Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  3

• Ensembl
  ENSMUSG00000089759 (Evidence)
• NCBI Gene
  320606

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089759	Ensembl Gene Model | MGI Sequence Detail	37603	C57BL/6J
transcript	ENSMUST00000153610	Ensembl | MGI Sequence Detail	2872	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:210663 Zhou J, et al., Respiratory failure, cleft palate and epilepsy in the mouse model of human Xq22.1 deletion syndrome. Hum Mol Genet. 2014 Jul 15;23(14):3823-9

TSS for 3632454L22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164166	ChrX:133936840-133936848 (-)	24,241 bp
Tssr164165	ChrX:133936827-133936839 (-)	24,252 bp
Tssr164164	ChrX:133926056-133926093 (-)	35,010 bp