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Rab11fip3 Gene Detail
Summary
  • Symbol
    Rab11fip3
  • Name
    RAB11 family interacting protein 3 (class II)
  • Synonyms
    D030060O14Rik, mKIAA0665, Rab11-FIP3
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444431
    NCBI Gene: 215445
  • Alliance
    gene page
  • Transcription Start Sites
    17 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:26208010-26288529 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 13.05 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2346 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444431
 protein coding gene Chr17:26208010-26289010 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023387
 protein coding gene Chr17:25106553-25194534 (-)
A/J MGP_AJ_G0023346
 protein coding gene Chr17:24364196-24454298 (-)
AKR/J MGP_AKRJ_G0023312
 protein coding gene Chr17:24479997-24563715 (-)
BALB/cJ MGP_BALBcJ_G0023351
 protein coding gene Chr17:24596415-24677970 (-)
C3H/HeJ MGP_C3HHeJ_G0023111
 protein coding gene Chr17:24860231-24950528 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023793
 protein coding gene Chr17:26159444-26261597 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021269
 protein coding gene Chr17:21826551-21906178 (-)
CAST/EiJ MGP_CASTEiJ_G0022613
 protein coding gene Chr17:24753410-24843790 (-)
CBA/J MGP_CBAJ_G0023086
 protein coding gene Chr17:27089885-27189756 (-)
DBA/2J MGP_DBA2J_G0023216
 protein coding gene Chr17:23965297-24046579 (-)
FVB/NJ MGP_FVBNJ_G0023186
 protein coding gene Chr17:23720661-23806929 (-)
LP/J MGP_LPJ_G0023293
 protein coding gene Chr17:25396571-25482657 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023205
 protein coding gene Chr17:26673469-26758837 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023833
 protein coding gene Chr17:24802797-24888137 (-)
PWK/PhJ MGP_PWKPhJ_G0022362
 protein coding gene Chr17:22741267-22820604 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022180
 protein coding gene Chr17:22882208-22969605 (-)
WSB/EiJ MGP_WSBEiJ_G0022676
 protein coding gene Chr17:24850276-24936477 (-)



Homology
more
  • Human Ortholog
    RAB11FIP3, RAB11 family interacting protein 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RAB11FIP3, RAB11 family interacting protein 3
  • Synonyms
    CART1, FIP3, FIP3-Rab11, Rab11-FIP3
  • Links
    NCBI Gene ID: 9727
    neXtProt AC: NX_O75154
    UniProt: O75154

  • Chr Location
    16p13.3; chr16:425649-523011 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    80
  • GO References
    10
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    751
  • Tissues
    36
  • cDNA Data
    89
  • Literature Summary
    3
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000037098 Ensembl Gene Model | MGI Sequence Detail 80520 C57BL/6J ±  kb
transcript ENSMUST00000122103 Ensembl | MGI Sequence Detail 5383 Not Applicable  
polypeptide ENSMUSP00000113521 Ensembl | MGI Sequence Detail 1092 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR002048 EF-hand domain
    IPR011992 EF-hand domain pair
    IPR037245 FIP-RBD, C-terminal domain superfamily
    IPR051977 Rab11-interacting regulator of endocytosis and ciliogenesis
    IPR019018 Rab-binding domain FIP-RBD
Molecular
Reagents
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  • All nucleic 92
    cDNA 90
    Primer pair 2

    Microarray probesets 2
References
more
  • Summaries
    All 41
    Developmental Gene Expression 3
    Gene Ontology 10
    Phenotypes 11
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory