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Samd12 Gene Detail
Summary
  • Symbol
    Samd12
  • Name
    sterile alpha motif domain containing 12
  • Synonyms
    A830094I09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444518
    NCBI Gene: 320679
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:53317206-53765933 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 21.10 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    12387 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444518
 protein coding gene Chr15:53262514-53765933 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021844
 protein coding gene Chr15:52475066-52938498 (-)
A/J MGP_AJ_G0021804
 protein coding gene Chr15:50402056-50849748 (-)
AKR/J MGP_AKRJ_G0021785
 protein coding gene Chr15:51813741-52266846 (-)
BALB/cJ MGP_BALBcJ_G0021811
 protein coding gene Chr15:50620524-51061448 (-)
C3H/HeJ MGP_C3HHeJ_G0021585
 protein coding gene Chr15:51916287-52368302 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022250
 protein coding gene Chr15:54541527-55005590 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019787
 protein coding gene Chr15:47708354-48140010 (-)
CAST/EiJ MGP_CASTEiJ_G0021102
 protein coding gene Chr15:52472803-52946248 (-)
CBA/J MGP_CBAJ_G0021554
 protein coding gene Chr15:56491786-56985413 (-)
DBA/2J MGP_DBA2J_G0021678
 protein coding gene Chr15:50249877-50699564 (-)
FVB/NJ MGP_FVBNJ_G0021656
 protein coding gene Chr15:49445141-49879188 (-)
LP/J MGP_LPJ_G0021748
 protein coding gene Chr15:52275773-52738651 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021680
 protein coding gene Chr15:61566305-62038408 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022273
 protein coding gene Chr15:52185738-52636369 (-)
PWK/PhJ MGP_PWKPhJ_G0020847
 protein coding gene Chr15:50352803-50797551 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020684
 protein coding gene Chr15:51916127-52369282 (-)
WSB/EiJ MGP_WSBEiJ_G0021157
 protein coding gene Chr15:52152567-52616734 (-)



Homology
more
  • Human Ortholog
    SAMD12, sterile alpha motif domain containing 12
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SAMD12, sterile alpha motif domain containing 12
  • Synonyms
    BAFME, BAFME1, FAME, FAME1, FCMTE1, MEBA
  • Links
    NCBI Gene ID: 401474
    neXtProt AC: NX_Q8N8I0
    UniProt: Q8N8I0

  • Chr Location
    8q24.11-q24.12; chr8:118131825-118622112 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with human SAMD12 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000058656 Ensembl Gene Model | MGI Sequence Detail 448728 C57BL/6J ±  kb
transcript ENSMUST00000078673 Ensembl | MGI Sequence Detail 9019 Not Applicable  
polypeptide ENSMUSP00000077741 Ensembl | MGI Sequence Detail 161 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 1
References
more
  • Summaries
    All 31
    Diseases 1
    Gene Ontology 1
    Phenotypes 17
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:155838 Katayama K, et al., Characterization of the chromosomal inversion associated with the Koa mutation in the mouse revealed the cause of skeletal abnormalities. BMC Genet. 2009;10:60
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory