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Vstm4 Gene Detail
Summary
  • Symbol
    Vstm4
  • Name
    V-set and transmembrane domain containing 4
  • Synonyms
    E130203B14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444633
    NCBI Gene: 320736
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:32578713-32661448 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 19.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2546 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444633
 protein coding gene Chr14:32578713-32661448 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021152
 protein coding gene Chr14:26125111-26214951 (+)
A/J MGP_AJ_G0021100
 protein coding gene Chr14:25125305-25210514 (+)
AKR/J MGP_AKRJ_G0021077
 protein coding gene Chr14:26276837-26359774 (+)
BALB/cJ MGP_BALBcJ_G0021104
 protein coding gene Chr14:25303182-25387374 (+)
C3H/HeJ MGP_C3HHeJ_G0020887
 protein coding gene Chr14:26164192-26249686 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021536
 protein coding gene Chr14:27152464-27241080 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019098
 protein coding gene Chr14:25180185-25265543 (+)
CAST/EiJ MGP_CASTEiJ_G0020412
 protein coding gene Chr14:25971554-26062476 (+)
CBA/J MGP_CBAJ_G0020854
 protein coding gene Chr14:28173064-28262264 (+)
DBA/2J MGP_DBA2J_G0020976
 protein coding gene Chr14:25175529-25257467 (+)
FVB/NJ MGP_FVBNJ_G0020960
 protein coding gene Chr14:25116463-25199990 (+)
LP/J MGP_LPJ_G0021045
 protein coding gene Chr14:26440038-26532882 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020986
 protein coding gene Chr14:27361070-27449705 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021569
 protein coding gene Chr14:26076678-26163086 (+)
PWK/PhJ MGP_PWKPhJ_G0020160
 protein coding gene Chr14:24635928-24722741 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019984
 protein coding gene Chr14:25699767-25793939 (+)
WSB/EiJ MGP_WSBEiJ_G0020467
 protein coding gene Chr14:26150010-26232344 (+)



Homology
more
  • Human Ortholog
    VSTM4, V-set and transmembrane domain containing 4
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    VSTM4, V-set and transmembrane domain containing 4
  • Synonyms
    C10orf72
  • Links
    NCBI Gene ID: 196740
    neXtProt AC: NX_Q8IW00
    UniProt: Q8IW00

  • Chr Location
    10q11.23; chr10:49014236-49115522 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 2 alleles in 2 genetic backgrounds
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    15
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 320736 NCBI Gene Model | MGI Sequence Detail 82736 C57BL/6J ±  kb
    transcript NM_178791 RefSeq | MGI Sequence Detail 2745 C57BL/6  
    polypeptide T1NXB5 UniProt | EBI | MGI Sequence Detail 319 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      3 Sequences
    • Protein Ontology
      PR:000031660 V-set and transmembrane domain-containing protein 4
      (term hierarchy)
    • InterPro Domains
      IPR007110 Immunoglobulin-like domain
      IPR036179 Immunoglobulin-like domain superfamily
      IPR013783 Immunoglobulin-like fold
      IPR051102 Immunoglobulin superfamily V-set and transmembrane domain-containing protein
      IPR013106 Immunoglobulin V-set domain
    • GlyGen
      T1NXB5 3 sites
    Molecular
    Reagents
    less
    • All nucleic 16
      cDNA 15
      Other 1

      Microarray probesets 2
    References
    more
    • Summaries
      All 26
      Developmental Gene Expression 1
      Gene Ontology 4
      Phenotypes 7
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory