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Ranbp3l Gene Detail
Summary
  • Symbol
    Ranbp3l
  • Name
    RAN binding protein 3-like
  • Synonyms
    C130037N17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444654
    NCBI Gene: 223332
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:8997433-9067417 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 3.82 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1630 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444654
 protein coding gene Chr15:8997209-9071355 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021709
 protein coding gene Chr15:6080634-6145682 (+)
A/J MGP_AJ_G0021669
 protein coding gene Chr15:5917193-5979179 (+)
AKR/J MGP_AKRJ_G0021647
 protein coding gene Chr15:5979263-6041642 (+)
BALB/cJ MGP_BALBcJ_G0021676
 protein coding gene Chr15:5832024-5890548 (+)
C3H/HeJ MGP_C3HHeJ_G0021452
 protein coding gene Chr15:6030016-6091631 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022115
 protein coding gene Chr15:6282150-6355164 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019652
 protein coding gene Chr15:5492478-5547856 (+)
CAST/EiJ MGP_CASTEiJ_G0020968
 protein coding gene Chr15:6026149-6093966 (+)
CBA/J MGP_CBAJ_G0021421
 protein coding gene Chr15:6439107-6502784 (+)
DBA/2J MGP_DBA2J_G0021545
 protein coding gene Chr15:5801685-5864490 (+)
FVB/NJ MGP_FVBNJ_G0021523
 protein coding gene Chr15:5732858-5787263 (+)
LP/J MGP_LPJ_G0021613
 protein coding gene Chr15:5998165-6068225 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021548
 protein coding gene Chr15:6678722-6744471 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022138
 protein coding gene Chr15:6026196-6099721 (+)
PWK/PhJ MGP_PWKPhJ_G0020711
 protein coding gene Chr15:5852189-5915152 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020549
 protein coding gene Chr15:5909677-5970627 (+)
WSB/EiJ MGP_WSBEiJ_G0021024
 protein coding gene Chr15:5970636-6031542 (+)



Homology
more
  • Human Ortholog
    RANBP3L, RAN binding protein 3 like
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RANBP3L, RAN binding protein 3 like
  • Links
    NCBI Gene ID: 202151
    neXtProt AC: NX_Q86VV4
    UniProt: Q86VV4

  • Chr Location
    5p13.2; chr5:36246913-36302114 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    5
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    42
  • RefSeq
    10
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000048424 Ensembl Gene Model | MGI Sequence Detail 69985 C57BL/6J ±  kb
transcript ENSMUST00000227191 Ensembl | MGI Sequence Detail 4230 Not Applicable  
polypeptide ENSMUSP00000154327 Ensembl | MGI Sequence Detail 491 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 3
References
more
  • Summaries
    All 21
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory