A630052C17Rik Gene Detail

Summary

• Symbol
  A630052C17Rik
• Name
  RIKEN cDNA A630052C17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444673
  NCBI Gene: 320757
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:29120909-29123558 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 16.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444673	lncRNA gene	Chr11:29120909-29123558 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015162	unclassified non-coding RNA gene	Chr11:27163631-27166280 (-)
A/J	MGP_AJ_G0015136	unclassified non-coding RNA gene	Chr11:26175002-26177696 (-)
AKR/J	MGP_AKRJ_G0015099	unclassified non-coding RNA gene	Chr11:27023418-27026035 (-)
BALB/cJ	MGP_BALBcJ_G0015099	unclassified non-coding RNA gene	Chr11:26363376-26365993 (-)
C3H/HeJ	MGP_C3HHeJ_G0014922	unclassified non-coding RNA gene	Chr11:26933776-26936470 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015555	unclassified non-coding RNA gene	Chr11:28134716-28137365 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013301	unclassified non-coding RNA gene	Chr11:24821078-24823692 (-)
CAST/EiJ	MGP_CASTEiJ_G0014476	unclassified non-coding RNA gene	Chr11:26973145-26975839 (-)
CBA/J	MGP_CBAJ_G0014901	unclassified non-coding RNA gene	Chr11:29425269-29427918 (-)
DBA/2J	MGP_DBA2J_G0014994	unclassified non-coding RNA gene	Chr11:26027994-26030688 (-)
FVB/NJ	MGP_FVBNJ_G0015006	unclassified non-coding RNA gene	Chr11:25831750-25834400 (-)
LP/J	MGP_LPJ_G0015076	unclassified non-coding RNA gene	Chr11:27416962-27419612 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015032	unclassified non-coding RNA gene	Chr11:30489708-30492358 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015594	unclassified non-coding RNA gene	Chr11:27129396-27132090 (-)
PWK/PhJ	MGP_PWKPhJ_G0014268	unclassified non-coding RNA gene	Chr11:26121507-26124201 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014055	unclassified non-coding RNA gene	Chr11:26808554-26811175 (-)
WSB/EiJ	MGP_WSBEiJ_G0014579	unclassified non-coding RNA gene	Chr11:26818624-26821274 (-)

Homology

• Gene Tree
  A630052C17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving A630052C17Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  710
• Tissues
  3
• cDNA Data
  12
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000086725 (Evidence)
• NCBI Gene
  320757

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086725	Ensembl Gene Model | MGI Sequence Detail	2650	C57BL/6J
transcript	ENSMUST00000129876	Ensembl | MGI Sequence Detail	2203	Not Applicable
polypeptide	Q8C9J1	UniProt | EBI | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 12

  cDNA 12

  
  

  Microarray probesets 3

References

• Summaries
  All 17

  Developmental Gene Expression 1

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A630052C17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107208	Chr11:29122727-29122756 (-)	816 bp