A630072M18Rik Gene Detail

Summary

• Symbol
  A630072M18Rik
• Name
  RIKEN cDNA A630072M18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444702
  NCBI Gene: 320770
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr5:21155987-21161396 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 9.83 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  273 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444702	lncRNA gene	Chr5:21155987-21161396 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004038	antisense lncRNA gene	Chr5:18475575-18480992 (+)
A/J	MGP_AJ_G0004018	antisense lncRNA gene	Chr5:17892468-17897867 (+)
AKR/J	MGP_AKRJ_G0003997	antisense lncRNA gene	Chr5:18569166-18574599 (+)
BALB/cJ	MGP_BALBcJ_G0004005	antisense lncRNA gene	Chr5:18320624-18326026 (+)
C3H/HeJ	MGP_C3HHeJ_G0003951	antisense lncRNA gene	Chr5:18623473-18628884 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004153	antisense lncRNA gene	Chr5:19844016-19849420 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003633	antisense lncRNA gene	Chr5:15963485-15969590 (+)
CAST/EiJ	MGP_CASTEiJ_G0003914	antisense lncRNA gene	Chr5:17964064-17969694 (+)
CBA/J	MGP_CBAJ_G0003945	antisense lncRNA gene	Chr5:20061213-20066612 (+)
DBA/2J	MGP_DBA2J_G0003959	antisense lncRNA gene	Chr5:18170080-18175481 (+)
FVB/NJ	MGP_FVBNJ_G0003979	antisense lncRNA gene	Chr5:17583541-17588950 (+)
LP/J	MGP_LPJ_G0004040	antisense lncRNA gene	Chr5:18889475-18894881 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003967	antisense lncRNA gene	Chr5:21378699-21384103 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004148	antisense lncRNA gene	Chr5:18235477-18240885 (+)
PWK/PhJ	MGP_PWKPhJ_G0003868	antisense lncRNA gene	Chr5:17234248-17239954 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003813	antisense lncRNA gene	Chr5:17595955-17601465 (+)
WSB/EiJ	MGP_WSBEiJ_G0003950	antisense lncRNA gene	Chr5:18284728-18290129 (+)

Homology

• Gene Tree
  A630072M18Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  13
• Chemically induced (other)
  2
• Gene trapped
  9
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving A630072M18Rik
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000101013 (Evidence)
• NCBI Gene
  320770

Representative Sequences			Length	Strain/Species
genomic	320770	NCBI Gene Model | MGI Sequence Detail	5410	C57BL/6J
transcript	NR_030699	RefSeq | MGI Sequence Detail	5410	C57BL/6

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 1

References

• Summaries
  All 20

  Diseases 1

  Phenotypes 12
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for A630072M18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45282	Chr5:21155769-21155773 (+)	-216 bp
Tssr45283	Chr5:21155928-21155948 (+)	-49 bp
Tssr45284	Chr5:21155954-21155970 (+)	-25 bp
Tssr45285	Chr5:21155981-21155992 (+)	0 bp
Tssr45286	Chr5:21156032-21156043 (+)	51 bp
Tssr45287	Chr5:21156169-21156193 (+)	194 bp
Tssr45288	Chr5:21156958-21156990 (+)	987 bp