B230319C09Rik Gene Detail

Summary

• Symbol
  B230319C09Rik
• Name
  RIKEN cDNA B230319C09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444713
  NCBI Gene: 320775
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:83418737-83425304 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 35.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  221 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444713	lncRNA gene	Chr6:83418737-83425304 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015642	unclassified non-coding RNA gene	Chr6:84447404-84453969 (+)
A/J	MGP_AJ_G0015618	unclassified non-coding RNA gene	Chr6:81236438-81243428 (+)
AKR/J	MGP_AKRJ_G0015581	unclassified non-coding RNA gene	Chr6:83590454-83597027 (+)
BALB/cJ	MGP_BALBcJ_G0015580	unclassified non-coding RNA gene	Chr6:81261329-81267869 (+)
C3H/HeJ	MGP_C3HHeJ_G0015400	unclassified non-coding RNA gene	Chr6:100792606-100799570 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016033	unclassified non-coding RNA gene	Chr6:86771503-86778067 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013766	unclassified non-coding RNA gene	Chr6:79588187-79597193 (+)
CAST/EiJ	MGP_CASTEiJ_G0014958	unclassified non-coding RNA gene	Chr6:83606826-83613383 (+)
CBA/J	MGP_CBAJ_G0015383	unclassified non-coding RNA gene	Chr6:90176919-90183483 (+)
DBA/2J	MGP_DBA2J_G0015477	unclassified non-coding RNA gene	Chr6:80554644-80561210 (+)
FVB/NJ	MGP_FVBNJ_G0015484	unclassified non-coding RNA gene	Chr6:79762371-79768911 (+)
LP/J	MGP_LPJ_G0015558	unclassified non-coding RNA gene	Chr6:84456215-84462789 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015507	unclassified non-coding RNA gene	Chr6:94487165-94493705 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016075	unclassified non-coding RNA gene	Chr6:83396500-83403069 (+)
PWK/PhJ	MGP_PWKPhJ_G0014741	unclassified non-coding RNA gene	Chr6:79458230-79464784 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014529	unclassified non-coding RNA gene	Chr6:82250004-82256595 (+)
WSB/EiJ	MGP_WSBEiJ_G0015062	unclassified non-coding RNA gene	Chr6:83836531-83843096 (+)

Homology

• Gene Tree
  B230319C09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Spontaneous
  1
• Genomic Mutations
  2 involving B230319C09Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000051844 (Evidence)
• NCBI Gene
  320775

Representative Sequences			Length	Strain/Species
genomic	320775	NCBI Gene Model | MGI Sequence Detail	6568	C57BL/6J
transcript	NR_028382	RefSeq | MGI Sequence Detail	1689	C57BL/6
polypeptide	Q8BPH5	UniProt | EBI | MGI Sequence Detail	115	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)