C330020E22Rik Gene Detail

Summary

• Symbol
  C330020E22Rik
• Name
  RIKEN cDNA C330020E22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444986
  NCBI Gene: 320896
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:129276486-129289058 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  615 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444986	lncRNA gene	Chr4:129276486-129292879 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  C330020E22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving C330020E22Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  4

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000120913 (Evidence)
• NCBI Gene
  320896

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120913	Ensembl Gene Model | MGI Sequence Detail	12573	C57BL/6J
transcript	ENSMUST00000246763	Ensembl | MGI Sequence Detail	1553	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for C330020E22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39145	Chr4:129275208-129275231 (+)	-1,266 bp
Tssr39146	Chr4:129276478-129276499 (+)	3 bp
Tssr39147	Chr4:129276514-129276560 (+)	51 bp