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H4c1 Gene Detail
Summary
  • Symbol
    H4c1
  • Name
    H4 clustered histone 1
  • Synonyms
    Hist1h4a
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448419
    NCBI Gene: 326619
  • Member of
    Hist1 cluster
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:23944778-23945232 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 9.91 cM, cytoband A2-A3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    144 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448419
 protein coding gene Chr13:23944675-23945232 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020365
 protein coding gene Chr13:21204594-21205134 (-)
A/J MGP_AJ_G0020314
 protein coding gene Chr13:20813843-20814383 (-)
AKR/J MGP_AKRJ_G0020294
 protein coding gene Chr13:21067364-21068031 (-)
BALB/cJ MGP_BALBcJ_G0020312
 protein coding gene Chr13:20807792-20810854 (-)
C3H/HeJ MGP_C3HHeJ_G0020116
 protein coding gene Chr13:21139375-21140608 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020749
 protein coding gene Chr13:21984718-21985256 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018337
 protein coding gene Chr13:19587539-19588079 (-)
CAST/EiJ MGP_CASTEiJ_G0019635
 protein coding gene Chr13:20822363-20822903 (-)
CBA/J MGP_CBAJ_G0020070
 protein coding gene Chr13:22838927-22842104 (-)
DBA/2J MGP_DBA2J_G0020196
 protein coding gene Chr13:20341921-20342461 (-)
FVB/NJ MGP_FVBNJ_G0020180
 protein coding gene Chr13:19992495-19994122 (-)
LP/J MGP_LPJ_G0020269
 protein coding gene Chr13:21512906-21514419 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020207
 protein coding gene Chr13:23134714-23135254 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020791
 protein coding gene Chr13:20920170-20920710 (-)
PWK/PhJ MGP_PWKPhJ_G0019387
 protein coding gene Chr13:20368858-20374127 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019204
 protein coding gene Chr13:19724274-19726277 (-)
WSB/EiJ MGP_WSBEiJ_G0019693
 protein coding gene Chr13:21057397-21057935 (-)



Homology
more
  • Human Ortholog
    H4C15, H4 clustered histone 15
  • Vertebrate Orthologs
    16
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    H4C15, H4 clustered histone 15
  • Synonyms
    H4-16, H4C1, H4C11, H4C12, H4C13, H4C14, H4C16, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4/o, HIST2H4B
  • Links
    NCBI Gene ID: 554313
    neXtProt AC: NX_P62805
    UniProt: P62805

  • Chr Location
    1q21.2
  • Human Ortholog
    H4C5, H4 clustered histone 5
  • Synonyms
    H4-16, H4C1, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16, H4C2, H4C3, H4C4, H4C6, H4C8, H4C9, H4FJ, H4/j, HIST1H4E, TEBIVANED3, TEVANED3
  • Links
    NCBI Gene ID: 8367
    neXtProt AC: NX_P62805
    UniProt: P62805

  • Chr Location
    6p22.2; chr6:26204610-26205021 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Gene trapped
    2
  • Radiation induced
    1
  • Genomic Mutations
    2 involving H4c1
  • Find Mice (IMSR)
    6 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    738
  • Tissues
    24
  • cDNA Data
    4
  • Literature Summary
    2
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 326619 NCBI Gene Model | MGI Sequence Detail 455 C57BL/6J ±  kb
transcript NM_178192 RefSeq | MGI Sequence Detail 455 C57BL/6  
polypeptide P62806 UniProt | EBI | MGI Sequence Detail 103 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 6
    Genomic 1
    cDNA 4
    Primer pair 1
Other
Accession IDs
less
MGI:6324963
References
more
  • Summaries
    All 26
    Developmental Gene Expression 2
    Phenotypes 10
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:270211 Yang P, et al., Tip60- and sirtuin 2-regulated MARCKS acetylation and phosphorylation are required for diabetic embryopathy. Nat Commun. 2019 Jan 17;10(1):282
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory