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Caprin2 Gene Detail
Summary
  • Symbol
    Caprin2
  • Name
    caprin family member 2
  • Synonyms
    C1qdc1, Eeg1, mKIAA1873, RNG140
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448541
    NCBI Gene: 232560
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:148743990-148797735 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 78.62 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    467 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448541
 protein coding gene Chr6:148743990-148797756 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031505
 protein coding gene Chr6:153944764-154002454 (-)
A/J MGP_AJ_G0031480
 protein coding gene Chr6:147833985-147888271 (-)
AKR/J MGP_AKRJ_G0031408
 protein coding gene Chr6:152236389-152307015 (-)
BALB/cJ MGP_BALBcJ_G0031488
 protein coding gene Chr6:147599522-147653054 (-)
C3H/HeJ MGP_C3HHeJ_G0031209
 protein coding gene Chr6:152290283-152347779 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031949
 protein coding gene Chr6:158037193-158092327 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029073
 protein coding gene Chr6:146552552-146611185 (-)
CAST/EiJ MGP_CASTEiJ_G0030578
 protein coding gene Chr6:151969628-152029212 (-)
CBA/J MGP_CBAJ_G0031169
 protein coding gene Chr6:164111686-164170895 (-)
DBA/2J MGP_DBA2J_G0031325
 protein coding gene Chr6:146628498-146682885 (-)
FVB/NJ MGP_FVBNJ_G0031277
 protein coding gene Chr6:145322695-145376377 (-)
LP/J MGP_LPJ_G0031411
 protein coding gene Chr6:154078152-154135406 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031317
 protein coding gene Chr6:167743757-167804727 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031982
 protein coding gene Chr6:152098045-152153024 (-)
PWK/PhJ MGP_PWKPhJ_G0030304
 protein coding gene Chr6:145145656-145200311 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030128
 protein coding gene Chr6:150200253-150259730 (-)
WSB/EiJ MGP_WSBEiJ_G0030671
 protein coding gene Chr6:152713390-152769094 (-)



Homology
more
  • Human Ortholog
    CAPRIN2, caprin family member 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CAPRIN2, caprin family member 2
  • Synonyms
    C1QDC1, EEG-1, EEG1, RNG140
  • Links
    NCBI Gene ID: 65981
    neXtProt AC: NX_Q6IMN6
    UniProt: Q6IMN6

  • Chr Location
    12p11.21; chr12:30709552-30823302 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    26
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    769
  • Tissues
    28
  • cDNA Data
    58
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000030309 Ensembl Gene Model | MGI Sequence Detail 53746 C57BL/6J ±  kb
    transcript ENSMUST00000111569 Ensembl | MGI Sequence Detail 3697 Not Applicable  
    polypeptide ENSMUSP00000107195 Ensembl | MGI Sequence Detail 1031 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 61
      cDNA 58
      Primer pair 3

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2141622, MGI:2142954
    References
    more
    • Summaries
      All 45
      Developmental Gene Expression 4
      Gene Ontology 8
      Phenotypes 9
    • Earliest
      J:86686 Okazaki N, et al., Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. DNA Res. 2003 Aug 31;10(4):167-80
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory