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D130020L05Rik Gene Detail
Summary
  • Symbol
    D130020L05Rik
  • Name
    RIKEN cDNA D130020L05 gene
  • Synonyms
    9430007L23Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2450270
    NCBI Gene: 319760
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:101048710-101055186 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 51.19 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    273 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2450270
 lncRNA gene Chr12:101048710-101055186 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005390
 lincRNA gene Chr12:102587420-102596379 (+)
A/J MGP_AJ_G0005373
 lincRNA gene Chr12:98715393-98721834 (+)
AKR/J MGP_AKRJ_G0005353
 lincRNA gene Chr12:101411634-101417876 (+)
BALB/cJ MGP_BALBcJ_G0005355
 lincRNA gene Chr12:99075253-99081490 (+)
C3H/HeJ MGP_C3HHeJ_G0005304
 lincRNA gene Chr12:101944269-101951381 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005509
 lincRNA gene Chr12:105747920-105756424 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004894
 lincRNA gene Chr12:95702879-95709190 (+)
CAST/EiJ MGP_CASTEiJ_G0005248
 lincRNA gene Chr12:97073243-97079528 (+)
CBA/J MGP_CBAJ_G0005293
 lincRNA gene Chr12:109671654-109677897 (+)
DBA/2J MGP_DBA2J_G0005310
 lincRNA gene Chr12:98169693-98175932 (+)
FVB/NJ MGP_FVBNJ_G0005336
 lincRNA gene Chr12:96890200-96896438 (+)
LP/J MGP_LPJ_G0005392
 lincRNA gene Chr12:102432606-102438844 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005318
 lincRNA gene Chr12:113238739-113244988 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005510
 lincRNA gene Chr12:100987728-100993967 (+)
PWK/PhJ MGP_PWKPhJ_G0005197
 lincRNA gene Chr12:92814399-92820908 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005118
 lincRNA gene Chr12:95171322-95181174 (+)
WSB/EiJ MGP_WSBEiJ_G0005298
 lincRNA gene Chr12:101853564-101862019 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    36
  • RefSeq
    4
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 319760 NCBI Gene Model | MGI Sequence Detail 6477 C57BL/6J ±  kb
transcript NR_038050 RefSeq | MGI Sequence Detail 2935 C57BL/6  
polypeptide Q8C2V0 UniProt | EBI | MGI Sequence Detail 178 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 2
Other
Accession IDs
less
MGI:2442679
References
more
  • Summaries
    All 18
    Phenotypes 7
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory