Scgb2b24 Gene Detail

Summary

• Symbol
  Scgb2b24
• Name
  secretoglobin, family 2B, member 24
• Synonyms
  Abpbg24, Abpz, C2b, Scgb2b3

• Feature Type
  protein coding gene
• IDs
  MGI:2655741
  NCBI Gene: 233090
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:33436618-33438720 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  171 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2655741	protein coding gene	Chr7:33436615-33438737 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0032066	protein coding gene	Chr7:32926287-32928762 (-)
A/J	MGP_AJ_G0032045	protein coding gene	Chr7:32168461-32171134 (-)
AKR/J	MGP_AKRJ_G0031978	protein coding gene	Chr7:32875838-32880319 (-)
BALB/cJ	MGP_BALBcJ_G0032052	protein coding gene	Chr7:32335132-32337463 (-)
C3H/HeJ	MGP_C3HHeJ_G0031769	protein coding gene	Chr7:33776709-33778831 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0032529	protein coding gene	Chr7:34663042-34665164 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0031104	protein coding gene	Chr7:24901061-24903181 (-)
CBA/J	MGP_CBAJ_G0031738	protein coding gene	Chr7:35673634-35675756 (-)
DBA/2J	MGP_DBA2J_G0031889	protein coding gene	Chr7:31912976-31915101 (-)
FVB/NJ	MGP_FVBNJ_G0031844	protein coding gene	Chr7:31905887-31908009 (-)
LP/J	MGP_LPJ_G0031967	protein coding gene	Chr7:33200602-33203077 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031882	protein coding gene	Chr7:34661538-34664191 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0032544	protein coding gene	Chr7:32392126-32394252 (-)
PWK/PhJ	MGP_PWKPhJ_G0030826	protein coding gene	Chr7:25320077-25322203 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0030661	protein coding gene	Chr7:21861382-21863495 (-)
WSB/EiJ	MGP_WSBEiJ_G0031214	protein coding gene	Chr7:32970955-32973077 (-)

Homology

• MGI Vertebrate Homology
  Scgb2b24 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Scgb2b24
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  10 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  706
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS21132.1

• Ensembl
  ENSMUSG00000046438 (Evidence)
• NCBI Gene
  233090

Representative Sequences			Length	Strain/Species
genomic	233090	NCBI Gene Model | MGI Sequence Detail	2103	C57BL/6J
transcript	NM_177446	RefSeq | MGI Sequence Detail	503	C57BL/6
polypeptide	Q7M747	UniProt | EBI | MGI Sequence Detail	112	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• Protein Ontology
  PR:000004539 androgen-binding protein zeta
  (term hierarchy)
• InterPro Domains
  IPR015332 Major allergen I polypeptide chain 2-like
  IPR016126 Secretoglobin
  IPR053723 Secretoglobin Domain-Containing
  IPR035960 Secretoglobin superfamily

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 1

References

• Summaries
  All 23

  Gene Ontology 1
• Earliest
  J:82365 Reynolds SD, et al., Secretoglobins SCGB3A1 and SCGB3A2 define secretory cell subsets in mouse and human airways. Am J Respir Crit Care Med. 2002 Dec 1;166(11):1498-509
• Latest
  J:185789 Jackson BC, et al., Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. Hum Genomics. 2011 Oct;5(6):691-702

TSS for Scgb2b24:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr71961	Chr7:33438728-33438747 (-)	-18 bp