BC051076 Gene Detail

Summary

• Symbol
  BC051076
• Name
  cDNA sequence BC051076

• Feature Type
  lncRNA gene
• IDs
  MGI:2670982
  NCBI Gene: 243090
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:88111344-88114211 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 43.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2670982	lncRNA gene	Chr5:88105481-88114211 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004111	antisense lncRNA gene	Chr5:88940117-88942984 (+)
A/J	MGP_AJ_G0004092	antisense lncRNA gene	Chr5:85308063-85310930 (+)
AKR/J	MGP_AKRJ_G0004070	antisense lncRNA gene	Chr5:88134247-88137114 (+)
BALB/cJ	MGP_BALBcJ_G0004078	antisense lncRNA gene	Chr5:86232580-86235447 (+)
C3H/HeJ	MGP_C3HHeJ_G0004024	antisense lncRNA gene	Chr5:88529618-88532485 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004226	antisense lncRNA gene	Chr5:92587737-92590604 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003703	antisense lncRNA gene	Chr5:80904736-80908372 (+)
CAST/EiJ	MGP_CASTEiJ_G0003987	antisense lncRNA gene	Chr5:87933785-87936641 (+)
CBA/J	MGP_CBAJ_G0004018	antisense lncRNA gene	Chr5:95521483-95524350 (+)
DBA/2J	MGP_DBA2J_G0004033	antisense lncRNA gene	Chr5:85478465-85481332 (+)
FVB/NJ	MGP_FVBNJ_G0004052	antisense lncRNA gene	Chr5:84386111-84388978 (+)
LP/J	MGP_LPJ_G0004113	antisense lncRNA gene	Chr5:89349783-89352650 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004041	antisense lncRNA gene	Chr5:100642860-100645727 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004222	antisense lncRNA gene	Chr5:87699826-87702693 (+)
PWK/PhJ	MGP_PWKPhJ_G0003940	antisense lncRNA gene	Chr5:84476655-84479522 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003885	antisense lncRNA gene	Chr5:87113139-87116007 (+)
WSB/EiJ	MGP_WSBEiJ_G0004022	antisense lncRNA gene	Chr5:88091941-88094808 (+)

Homology

• Gene Tree
  BC051076
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving BC051076
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  15 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000055961 (Evidence)
• NCBI Gene
  243090

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000055961	Ensembl Gene Model | MGI Sequence Detail	2868	C57BL/6J
transcript	ENSMUST00000199477	Ensembl | MGI Sequence Detail	2868	Not Applicable
polypeptide	Q80XE3	UniProt | EBI | MGI Sequence Detail	452	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  Genomic 2

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for BC051076:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46960	Chr5:88111132-88111135 (+)	-210 bp
Tssr1532	Chr5:88111193-88111194 (+)	-150 bp
Tssr46961	Chr5:88112259-88112266 (+)	919 bp