AA465934 Gene Detail

Summary

• Symbol
  AA465934
• Name
  expressed sequence AA465934

• Feature Type
  lncRNA gene
• IDs
  MGI:2671018
  NCBI Gene: 613254
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:83182525-83185463 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 50.30 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2671018	lncRNA gene	Chr11:83182513-83185527 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015190	unclassified non-coding RNA gene	Chr11:84611334-84614249 (+)
A/J	MGP_AJ_G0015164	unclassified non-coding RNA gene	Chr11:81399965-81402878 (+)
AKR/J	MGP_AKRJ_G0015127	unclassified non-coding RNA gene	Chr11:83820732-83823672 (+)
BALB/cJ	MGP_BALBcJ_G0015126	unclassified non-coding RNA gene	Chr11:81810633-81813550 (+)
C3H/HeJ	MGP_C3HHeJ_G0014950	unclassified non-coding RNA gene	Chr11:83873867-83876771 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015583	unclassified non-coding RNA gene	Chr11:87208885-87211817 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013326	unclassified non-coding RNA gene	Chr11:78526840-78529556 (+)
CAST/EiJ	MGP_CASTEiJ_G0014503	unclassified non-coding RNA gene	Chr11:84460914-84463830 (+)
CBA/J	MGP_CBAJ_G0014929	unclassified non-coding RNA gene	Chr11:90985485-90988399 (+)
DBA/2J	MGP_DBA2J_G0015022	unclassified non-coding RNA gene	Chr11:80997584-81000491 (+)
FVB/NJ	MGP_FVBNJ_G0015034	unclassified non-coding RNA gene	Chr11:80478933-80481851 (+)
LP/J	MGP_LPJ_G0015103	unclassified non-coding RNA gene	Chr11:85170036-85172943 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015060	unclassified non-coding RNA gene	Chr11:91148667-91151643 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015622	unclassified non-coding RNA gene	Chr11:84084870-84087783 (+)
PWK/PhJ	MGP_PWKPhJ_G0014295	unclassified non-coding RNA gene	Chr11:81756570-81759559 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014082	unclassified non-coding RNA gene	Chr11:83633038-83635935 (+)
WSB/EiJ	MGP_WSBEiJ_G0014606	unclassified non-coding RNA gene	Chr11:83957985-83960880 (+)

Homology

• Gene Tree
  AA465934
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  4
• Targeted
  1
• Genomic Mutations
  2 involving AA465934
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  721
• Tissues
  13
• cDNA Data
  4
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000093483 (Evidence)
• NCBI Gene
  613254

Representative Sequences			Length	Strain/Species
genomic	613254	NCBI Gene Model | MGI Sequence Detail	2939	C57BL/6J
transcript	NR_028363	RefSeq | MGI Sequence Detail	382	C57BL/6

Molecular
Reagents

• All nucleic 7

  cDNA 4

  Primer pair 3

References

• Summaries
  All 22

  Developmental Gene Expression 2

  Phenotypes 10
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:313620 Nabeshima R, et al., Loss of Fam60a, a Sin3a subunit, results in embryonic lethality and is associated with aberrant methylation at a subset of gene promoters. Elife. 2018 Aug 2;7:e36435

TSS for AA465934:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103677	Chr11:83182497-83182508 (+)	-22 bp
Tssr103678	Chr11:83182509-83182535 (+)	-3 bp
Tssr103679	Chr11:83182545-83182574 (+)	35 bp
Tssr103680	Chr11:83182792-83182793 (+)	268 bp