BC030343 Gene Detail

Summary

• Symbol
  BC030343
• Name
  cDNA sequence BC030343

• Feature Type
  lncRNA gene
• IDs
  MGI:2679267
  NCBI Gene: 269723
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:143255799-143258271 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2679267	lncRNA gene	Chr5:143255799-143258271 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006848	lincRNA gene	Chr5:148591630-148594066 (+)
A/J	MGP_AJ_G0006842	lincRNA gene	Chr5:142214441-142216879 (+)
AKR/J	MGP_AKRJ_G0006812	lincRNA gene	Chr5:146673598-146676034 (+)
BALB/cJ	MGP_BALBcJ_G0006818	lincRNA gene	Chr5:143466374-143468814 (+)
C3H/HeJ	MGP_C3HHeJ_G0006763	lincRNA gene	Chr5:147485541-147487967 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006982	lincRNA gene	Chr5:154022270-154024708 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006234	lincRNA gene	Chr5:135993966-135996857 (+)
CAST/EiJ	MGP_CASTEiJ_G0006682	lincRNA gene	Chr5:146977299-146979664 (+)
CBA/J	MGP_CBAJ_G0006745	lincRNA gene	Chr5:160372280-160374746 (+)
DBA/2J	MGP_DBA2J_G0006765	lincRNA gene	Chr5:141981928-141984364 (+)
FVB/NJ	MGP_FVBNJ_G0006788	lincRNA gene	Chr5:141191071-141193497 (+)
LP/J	MGP_LPJ_G0006848	lincRNA gene	Chr5:149195699-149198135 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006770	lincRNA gene	Chr5:162773118-162775556 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006985	lincRNA gene	Chr5:146518149-146520587 (+)
PWK/PhJ	MGP_PWKPhJ_G0006624	lincRNA gene	Chr5:141066770-141069303 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006531	lincRNA gene	Chr5:144254219-144257751 (+)
WSB/EiJ	MGP_WSBEiJ_G0006736	lincRNA gene	Chr5:147310141-147312577 (+)

Homology

• Gene Tree
  BC030343
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000105345 (Evidence)
• NCBI Gene
  269723

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105345	Ensembl Gene Model | MGI Sequence Detail	2473	C57BL/6J
transcript	ENSMUST00000199606	Ensembl | MGI Sequence Detail	2473	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for BC030343:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49642	Chr5:143255799-143255839 (+)	20 bp