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Vwa5b2 Gene Detail
Summary
  • Symbol
    Vwa5b2
  • Name
    von Willebrand factor A domain containing 5B2
  • Synonyms
    EG328644, MGC:62438
  • Feature Type
    protein coding gene
  • IDs
    MGI:2681859
    NCBI Gene: 328643
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:20408221-20424127 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 12.47 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    398 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2681859
 protein coding gene Chr16:20408174-20424128 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022646
 protein coding gene Chr16:17924573-17942806 (+)
A/J MGP_AJ_G0022608
 protein coding gene Chr16:17061545-17079864 (+)
AKR/J MGP_AKRJ_G0022583
 protein coding gene Chr16:17710631-17726520 (+)
BALB/cJ MGP_BALBcJ_G0022612
 protein coding gene Chr16:17221550-17237531 (+)
C3H/HeJ MGP_C3HHeJ_G0022377
 protein coding gene Chr16:17876869-17892760 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023063
 protein coding gene Chr16:18274212-18290115 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020580
 protein coding gene Chr16:17749469-17765460 (+)
CAST/EiJ MGP_CASTEiJ_G0021907
 protein coding gene Chr16:17849790-17866874 (+)
CBA/J MGP_CBAJ_G0022349
 protein coding gene Chr16:19026331-19043115 (+)
DBA/2J MGP_DBA2J_G0022481
 protein coding gene Chr16:16990281-17006154 (+)
FVB/NJ MGP_FVBNJ_G0022456
 protein coding gene Chr16:17025784-17041655 (+)
LP/J MGP_LPJ_G0022548
 protein coding gene Chr16:17657350-17674628 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022476
 protein coding gene Chr16:18707512-18723335 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023074
 protein coding gene Chr16:17675909-17691796 (+)
PWK/PhJ MGP_PWKPhJ_G0021648
 protein coding gene Chr16:17251561-17268707 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021477
 protein coding gene Chr16:17473474-17489382 (+)
WSB/EiJ MGP_WSBEiJ_G0021951
 protein coding gene Chr16:17665705-17682517 (+)



Homology
more
  • Human Ortholog
    VWA5B2, von Willebrand factor A domain containing 5B2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    VWA5B2, von Willebrand factor A domain containing 5B2
  • Links
    NCBI Gene ID: 90113
    neXtProt AC: NX_Q8N398
    UniProt: Q8N398

  • Chr Location
    3q27.1; chr3:184229585-184242329 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    813
  • Tissues
    18
  • cDNA Data
    12
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000046613 Ensembl Gene Model | MGI Sequence Detail 15907 C57BL/6J ±  kb
transcript ENSMUST00000159780 Ensembl | MGI Sequence Detail 4042 Not Applicable  
polypeptide ENSMUSP00000123727 Ensembl | MGI Sequence Detail 1248 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
  • InterPro Domains
    IPR013694 VIT domain
    IPR052627 von Willebrand factor A domain-containing protein
    IPR036465 von Willebrand factor A-like domain superfamily
    IPR002035 von Willebrand factor, type A
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 4
Other
Accession IDs
less
MGI:2146690, MGI:3646631
References
more
  • Summaries
    All 26
    Developmental Gene Expression 2
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory