BC046401 Gene Detail

Summary

• Symbol
  BC046401
• Name
  cDNA sequence BC046401

• Feature Type
  lncRNA gene
• IDs
  MGI:2683561
  NCBI Gene: 394191
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:165699604-165700954 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 86.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2683561	lncRNA gene	Chr2:165699604-165700954 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015489	unclassified non-coding RNA gene	Chr2:171448309-171449658 (+)
A/J	MGP_AJ_G0015466	unclassified non-coding RNA gene	Chr2:164419813-164421163 (+)
AKR/J	MGP_AKRJ_G0015430	unclassified non-coding RNA gene	Chr2:169329142-169330492 (+)
BALB/cJ	MGP_BALBcJ_G0015429	unclassified non-coding RNA gene	Chr2:164780714-164782064 (+)
C3H/HeJ	MGP_C3HHeJ_G0015252	unclassified non-coding RNA gene	Chr2:169678446-169679796 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015883	unclassified non-coding RNA gene	Chr2:176426035-176427385 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013621	unclassified non-coding RNA gene	Chr2:157802135-157803481 (+)
CAST/EiJ	MGP_CASTEiJ_G0014804	unclassified non-coding RNA gene	Chr2:170105482-170106862 (+)
CBA/J	MGP_CBAJ_G0015233	unclassified non-coding RNA gene	Chr2:182865367-182866717 (+)
DBA/2J	MGP_DBA2J_G0015327	unclassified non-coding RNA gene	Chr2:163571076-163572426 (+)
FVB/NJ	MGP_FVBNJ_G0015334	unclassified non-coding RNA gene	Chr2:162035952-162037302 (+)
LP/J	MGP_LPJ_G0015405	unclassified non-coding RNA gene	Chr2:171482372-171483721 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015358	unclassified non-coding RNA gene	Chr2:186343617-186344967 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015923	unclassified non-coding RNA gene	Chr2:169221967-169223317 (+)
PWK/PhJ	MGP_PWKPhJ_G0014592	unclassified non-coding RNA gene	Chr2:163186451-163187822 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014380	unclassified non-coding RNA gene	Chr2:168141966-168143344 (+)
WSB/EiJ	MGP_WSBEiJ_G0014911	unclassified non-coding RNA gene	Chr2:170122189-170123539 (+)

Homology

• Gene Tree
  BC046401
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  12
• Gene trapped
  12
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000085274 (Evidence)
• NCBI Gene
  394191

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085274	Ensembl Gene Model | MGI Sequence Detail	1351	C57BL/6J
transcript	ENSMUST00000155786	Ensembl | MGI Sequence Detail	847	Not Applicable

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9