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Snhg3 Gene Detail
Summary
  • Symbol
    Snhg3
  • Name
    small nucleolar RNA host gene 3
  • Synonyms
    Rnu17d, U17HG
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2684817
    NCBI Gene: 399101
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:132079244-132080997 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 65.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    175 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2684817
 lncRNA gene Chr4:132075325-132080997 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015579
 unclassified non-coding RNA gene Chr4:134493759-134499576 (-)
A/J MGP_AJ_G0015556
 unclassified non-coding RNA gene Chr4:128904512-128910184 (-)
AKR/J MGP_AKRJ_G0015520
 unclassified non-coding RNA gene Chr4:132523588-132529437 (-)
BALB/cJ MGP_BALBcJ_G0015518
 unclassified non-coding RNA gene Chr4:129516633-129522308 (-)
C3H/HeJ MGP_C3HHeJ_G0015340
 unclassified non-coding RNA gene Chr4:132783372-132791003 (-)
C57BL/6NJ MGP_C57BL6NJ_G0015971
 unclassified non-coding RNA gene Chr4:139343463-139349134 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013706
 unclassified non-coding RNA gene Chr4:121981018-121986028 (-)
CAST/EiJ MGP_CASTEiJ_G0014895
 unclassified non-coding RNA gene Chr4:130860628-130867212 (-)
CBA/J MGP_CBAJ_G0015321
 unclassified non-coding RNA gene Chr4:142915483-142924274 (-)
DBA/2J MGP_DBA2J_G0015414
 unclassified non-coding RNA gene Chr4:129327659-129333323 (-)
FVB/NJ MGP_FVBNJ_G0015422
 unclassified non-coding RNA gene Chr4:128176347-128182027 (-)
LP/J MGP_LPJ_G0015495
 unclassified non-coding RNA gene Chr4:134649729-134655526 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015445
 unclassified non-coding RNA gene Chr4:147508616-147514280 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016013
 unclassified non-coding RNA gene Chr4:132928534-132934208 (-)
PWK/PhJ MGP_PWKPhJ_G0014680
 unclassified non-coding RNA gene Chr4:126007771-126013744 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014468
 unclassified non-coding RNA gene Chr4:128801488-128807384 (-)
WSB/EiJ MGP_WSBEiJ_G0015000
 unclassified non-coding RNA gene Chr4:133113567-133119221 (-)



Homology
more
  • Human Ortholog
    SNHG3, small nucleolar RNA host gene 3
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNHG3, small nucleolar RNA host gene 3
  • Synonyms
    NCRNA00014, RNU17C, RNU17D, U17HG, U17HG-A, U17HG-AB
  • Links
    NCBI Gene ID: 8420

  • Chr Location
    1p35.3; chr1:28505943-28510892 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    2
  • Gene trapped
    3
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Snhg3
  • Find Mice (IMSR)
    99 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    17
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    32
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 399101 NCBI Gene Model | MGI Sequence Detail 1754 C57BL/6J ±  kb
transcript NR_003270 RefSeq | MGI Sequence Detail 437 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 1
References
more
  • Summaries
    All 25
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:48643 Pelczar P, et al., The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family. Mol Cell Biol. 1998 Aug;18(8):4509-18
  • Latest
    J:294329 Lu W, et al., The long non-coding RNA Snhg3 is essential for mouse embryonic stem cell self-renewal and pluripotency. Stem Cell Res Ther. 2019 May 31;10(1):157
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory