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Rundc3b Gene Detail
Summary
  • Symbol
    Rundc3b
  • Name
    RUN domain containing 3B
  • Synonyms
    LOC242819, MGC:68340
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685286
    NCBI Gene: 242819
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:8540334-8672952 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 3.43 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    3107 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685286
 protein coding gene Chr5:8540334-8673079 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029285
 protein coding gene Chr5:5460795-5604752 (-)
A/J MGP_AJ_G0029248
 protein coding gene Chr5:5342268-5470145 (-)
AKR/J MGP_AKRJ_G0029197
 protein coding gene Chr5:5428860-5562604 (-)
BALB/cJ MGP_BALBcJ_G0029265
 protein coding gene Chr5:5497122-5638053 (-)
C3H/HeJ MGP_C3HHeJ_G0028985
 protein coding gene Chr5:5649658-5786128 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029715
 protein coding gene Chr5:5975356-6118427 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026958
 protein coding gene Chr5:5093469-5214632 (-)
CAST/EiJ MGP_CASTEiJ_G0028398
 protein coding gene Chr5:5478184-5605311 (-)
CBA/J MGP_CBAJ_G0028946
 protein coding gene Chr5:6090770-6259183 (-)
DBA/2J MGP_DBA2J_G0029100
 protein coding gene Chr5:5448628-5574242 (-)
FVB/NJ MGP_FVBNJ_G0029062
 protein coding gene Chr5:5218677-5341033 (-)
LP/J MGP_LPJ_G0029189
 protein coding gene Chr5:5596158-5724219 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029089
 protein coding gene Chr5:6114676-6277007 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029746
 protein coding gene Chr5:5410739-5544055 (-)
PWK/PhJ MGP_PWKPhJ_G0028120
 protein coding gene Chr5:5228698-5354951 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027953
 protein coding gene Chr5:5609483-5735818 (-)
WSB/EiJ MGP_WSBEiJ_G0028478
 protein coding gene Chr5:5449787-5587518 (-)



Homology
more
  • Human Ortholog
    RUNDC3B, RUN domain containing 3B
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RUNDC3B, RUN domain containing 3B
  • Synonyms
    RPIB9, RPIP9
  • Links
    NCBI Gene ID: 154661
    neXtProt AC: NX_Q96NL0
    UniProt: Q96NL0

  • Chr Location
    7q21.12; chr7:87627548-87832296 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    15
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000040570 Ensembl Gene Model | MGI Sequence Detail 132619 C57BL/6J ±  kb
    transcript ENSMUST00000115378 Ensembl | MGI Sequence Detail 1891 Not Applicable  
    polypeptide ENSMUSP00000111036 Ensembl | MGI Sequence Detail 457 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 15
      cDNA 15

      Microarray probesets 3
    References
    more
    • Summaries
      All 23
      Phenotypes 5
    • Earliest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory