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5330416C01Rik Gene Detail
Summary
  • Symbol
    5330416C01Rik
  • Name
    RIKEN cDNA 5330416C01 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2685378
    NCBI Gene: 403201
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:97870006-97883919 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 51.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    512 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685378
 lncRNA gene Chr13:97870006-97883919 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005496
 lincRNA gene Chr13:99352791-99371245 (-)
A/J MGP_AJ_G0005482
 lincRNA gene Chr13:95589184-95603999 (-)
AKR/J MGP_AKRJ_G0005461
 lincRNA gene Chr13:98511644-98525712 (-)
BALB/cJ MGP_BALBcJ_G0005463
 lincRNA gene Chr13:96283029-96297367 (-)
C3H/HeJ MGP_C3HHeJ_G0005411
 lincRNA gene Chr13:98230700-98246343 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005619
 lincRNA gene Chr13:102355986-102370331 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004993
 lincRNA gene Chr13:91343248-91357046 (-)
CAST/EiJ MGP_CASTEiJ_G0005353
 lincRNA gene Chr13:97576147-97592075 (-)
CBA/J MGP_CBAJ_G0005400
 lincRNA gene Chr13:106444549-106460713 (-)
DBA/2J MGP_DBA2J_G0005416
 lincRNA gene Chr13:95354857-95369283 (-)
FVB/NJ MGP_FVBNJ_G0005442
 lincRNA gene Chr13:94116412-94130507 (-)
LP/J MGP_LPJ_G0005499
 lincRNA gene Chr13:99464739-99478871 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005425
 lincRNA gene Chr13:106751034-106765507 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005619
 lincRNA gene Chr13:97948117-97962927 (-)
PWK/PhJ MGP_PWKPhJ_G0005304
 lincRNA gene Chr13:94150956-94167206 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005223
 lincRNA gene Chr13:94218874-94234042 (-)
WSB/EiJ MGP_WSBEiJ_G0005403
 lincRNA gene Chr13:98392908-98408497 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 403201 NCBI Gene Model | MGI Sequence Detail 13914 C57BL/6J ±  kb
transcript NR_152140 RefSeq | MGI Sequence Detail 3287 C57BL/6  
polypeptide Q8BSU9 UniProt | EBI | MGI Sequence Detail 119 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4
References
more
  • Summaries
    All 10
  • Earliest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory