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Trav6d-4 Gene Detail
Summary
  • Symbol
    Trav6d-4
  • Name
    T cell receptor alpha variable 6D-4
  • Synonyms
    LOC193570, LOC277146
  • Feature Type
    gene segment
  • IDs
    MGI:2685547
    NCBI Gene: 277146
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:52990855-52991303 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.08 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    14 from dbSNP Build 142
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685547
 gene segment Chr14:52990824-52991303 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002528
 gene segment Chr14:46800065-46800544 (+)
A/J MGP_AJ_G0002497
 gene segment Chr14:45599388-45599867 (+)
AKR/J MGP_AKRJ_G0002487
 gene segment Chr14:47252716-47253195 (+)
BALB/cJ MGP_BALBcJ_G0002494
 gene segment Chr14:45692362-45692841 (+)
C3H/HeJ MGP_C3HHeJ_G0002469
 gene segment Chr14:46992381-46992860 (+)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J MGP_LPJ_G0002525
 gene segment Chr14:47448801-47449280 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002453
 gene segment Chr14:49810311-49810790 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002617
 gene segment Chr14:46583243-46583722 (+)
PWK/PhJ MGP_PWKPhJ_G0002414
 gene segment Chr14:42112955-42113434 (+)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV9-2, T cell receptor alpha variable 9-2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV9-2, T cell receptor alpha variable 9-2
  • Synonyms
    TCRAV22S1, TCRAV9S2, TRAV92
  • Links
    NCBI Gene ID: 28677
    UniProt: A0A087WT02

  • Chr Location
    14q11.2; chr14:21941128-21941657 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    18
  • RefSeq
    3
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 277146 NCBI Gene Model | MGI Sequence Detail 449 C57BL/6J ±  kb
polypeptide Q5R1I0 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051287 T cell receptor variable region
Molecular
Reagents
less

  • Microarray probesets 1
Other
Accession IDs
less
MGI:2684871
References
more
  • Summaries
    All 10
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory