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Nup62cl Gene Detail
Summary
  • Symbol
    Nup62cl
  • Name
    nucleoporin 62 C-terminal like
  • Synonyms
    LOC279706
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685565
    NCBI Gene: 279706
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:138907551-138963456 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 61.35 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    895 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685565
 protein coding gene ChrX:138907551-138963461 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036131
 protein coding gene ChrX:137532503-137588316 (-)
A/J MGP_AJ_G0036109
 protein coding gene ChrX:136901669-136975524 (-)
AKR/J MGP_AKRJ_G0036034
 protein coding gene ChrX:141304656-141360406 (-)
BALB/cJ MGP_BALBcJ_G0036099
 protein coding gene ChrX:135244365-135302570 (-)
C3H/HeJ MGP_C3HHeJ_G0035808
 protein coding gene ChrX:137555446-137611791 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036624
 protein coding gene ChrX:141570713-141632565 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033448
 protein coding gene ChrX:128648870-128705155 (-)
CAST/EiJ MGP_CASTEiJ_G0035099
 protein coding gene ChrX:118360915-118417374 (-)
CBA/J MGP_CBAJ_G0035785
 protein coding gene ChrX:145904680-145960361 (-)
DBA/2J MGP_DBA2J_G0035942
 protein coding gene ChrX:136074556-136130529 (-)
FVB/NJ MGP_FVBNJ_G0035876
 protein coding gene ChrX:135307120-135365151 (-)
LP/J MGP_LPJ_G0036033
 protein coding gene ChrX:138494887-138549767 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035913
 protein coding gene ChrX:153438111-153498413 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036660
 protein coding gene ChrX:136844362-136901857 (-)
PWK/PhJ MGP_PWKPhJ_G0034792
 protein coding gene ChrX:115275402-115332336 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034618
 protein coding gene ChrX:118893782-118949271 (-)
WSB/EiJ MGP_WSBEiJ_G0035234
 protein coding gene ChrX:135174042-135229302 (-)



Homology
more
  • Human Ortholog
    NUP62CL, nucleoporin 62 C-terminal like
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NUP62CL, nucleoporin 62 C-terminal like
  • Links
    NCBI Gene ID: 54830
    neXtProt AC: NX_Q9H1M0
    UniProt: Q9H1M0

  • Chr Location
    Xq22.3; chrX:107123427-107206433 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    20
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 279706 NCBI Gene Model | MGI Sequence Detail 55906 C57BL/6J ±  kb
    transcript NM_001081668 RefSeq | MGI Sequence Detail 1144 C57BL/6  
    polypeptide NP_001075137 RefSeq | MGI Sequence Detail 272 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      6 Sequences
    • InterPro Domains
      IPR007758 Nucleoporin, NSP1-like, C-terminal
      IPR026010 Nucleoporin NSP1/NUP62
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 20

      Microarray probesets 1
    References
    more
    • Summaries
      All 21
      Developmental Gene Expression 1
      Gene Ontology 1
      Phenotypes 9
    • Earliest
      J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
    • Latest
      J:344223 Zhang W, et al., NLRP14 deficiency causes female infertility with oocyte maturation defects and early embryonic arrest by impairing cytoplasmic UHRF1 abundance. Cell Rep. 2023 Dec 26;42(12):113531
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory