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Susd5 Gene Detail
Summary
  • Symbol
    Susd5
  • Name
    sushi domain containing 5
  • Synonyms
    LOC382111
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685972
    NCBI Gene: 382111
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:113886422-113927801 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 64.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1449 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685972
 protein coding gene Chr9:113886208-113927801 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035383
 protein coding gene Chr9:116455748-116504235 (+)
A/J MGP_AJ_G0035364
 protein coding gene Chr9:112124060-112167625 (+)
AKR/J MGP_AKRJ_G0035295
 protein coding gene Chr9:114977713-115023583 (+)
BALB/cJ MGP_BALBcJ_G0035359
 protein coding gene Chr9:111938977-111981869 (+)
C3H/HeJ MGP_C3HHeJ_G0035067
 protein coding gene Chr9:115498875-115541030 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035880
 protein coding gene Chr9:119611043-119655586 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032767
 protein coding gene Chr9:109266453-109307155 (+)
CAST/EiJ MGP_CASTEiJ_G0034373
 protein coding gene Chr9:115345802-115389699 (+)
CBA/J MGP_CBAJ_G0035034
 protein coding gene Chr9:124018188-124065795 (+)
DBA/2J MGP_DBA2J_G0035192
 protein coding gene Chr9:111584224-111626474 (+)
FVB/NJ MGP_FVBNJ_G0035139
 protein coding gene Chr9:110409279-110451807 (+)
LP/J MGP_LPJ_G0035272
 protein coding gene Chr9:116742416-116785930 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035180
 protein coding gene Chr9:125253731-125298011 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035901
 protein coding gene Chr9:115372012-115413118 (+)
PWK/PhJ MGP_PWKPhJ_G0034078
 protein coding gene Chr9:111878173-111919435 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033913
 protein coding gene Chr9:115431746-115477797 (+)
WSB/EiJ MGP_WSBEiJ_G0034493
 protein coding gene Chr9:115219718-115268735 (+)



Homology
more
  • Human Ortholog
    SUSD5, sushi domain containing 5
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SUSD5, sushi domain containing 5
  • Links
    NCBI Gene ID: 26032
    neXtProt AC: NX_O60279
    UniProt: O60279

  • Chr Location
    3p22.3; chr3:33150043-33218810 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 382111 NCBI Gene Model | MGI Sequence Detail 41380 C57BL/6J ±  kb
transcript NM_001101510 RefSeq | MGI Sequence Detail 3874 C57BL/6  
polypeptide NP_001094980 RefSeq | MGI Sequence Detail 619 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:216917 Fouillade C, et al., Transcriptome analysis for Notch3 target genes identifies Grip2 as a novel regulator of myogenic response in the cerebrovasculature. Arterioscler Thromb Vasc Biol. 2013 Jan;33(1):76-86
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory