Trav6d-6 Gene Detail

Summary

• Symbol
  Trav6d-6
• Name
  T cell receptor alpha variable 6D-6
• Synonyms
  LOC382958

• Feature Type
  gene segment
• IDs
  MGI:2686066
  NCBI Gene: 100042444
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:53059379-53059816 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.11 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  11 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2686066	gene segment	Chr14:53059379-53059816 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0002517	gene segment	Chr14:45987219-45992948 (+)
AKR/J	MGP_AKRJ_G0002514	gene segment	Chr14:48103992-48105554 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0002551	gene segment	Chr14:48305503-48306426 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0002622	gene segment	Chr14:46649684-46650392 (+)
PWK/PhJ	MGP_PWKPhJ_G0002417	gene segment	Chr14:42177134-42177563 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  TRAV9-2, T cell receptor alpha variable 9-2

• Vertebrate Orthologs
  4

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV9-2, T cell receptor alpha variable 9-2
  
• Synonyms
  TCRAV22S1, TCRAV9S2, TRAV92
• Links
  HGNC:12154

  NCBI Gene ID: 28677

  UniProt: A0A087WT02

  
  
• Chr Location
  14q11.2; chr14:21941128-21941657 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav6d-6 stringent orthology
  1 human;1 mouse;1 rat;2 zebrafish
  
• HCOP
  vertebrate homology predictions: TRAV9-2
• Gene Tree
  Trav6d-6
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000094176 (Evidence)
• NCBI Gene
  100042444

Representative Sequences			Length	Strain/Species
genomic	100042444	NCBI Gene Model | MGI Sequence Detail	438	C57BL/6J
transcript	M16676	GenBank | ENA | DDBJ | MGI Sequence Detail	396	C57BL/6
polypeptide	A0A075B603	UniProt | EBI | MGI Sequence Detail	114	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051287 T cell receptor variable region

References

• Summaries
  All 7
• Earliest
  J:9520 Yague J, et al., The structure of V alpha and J alpha segments in the mouse. Nucleic Acids Res. 1988 Dec 9;16(23):11355-64
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61