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Lratd2 Gene Detail
Summary
  • Symbol
    Lratd2
  • Name
    LRAT domain containing 1
  • Synonyms
    D330050I23Rik, Fam84b
  • Feature Type
    protein coding gene
  • IDs
    MGI:3026924
    NCBI Gene: 399603
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:60690845-60697954 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 25.70 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    233 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3026924
 protein coding gene Chr15:60690843-60725627 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021888
 protein coding gene Chr15:60075488-60111097 (-)
A/J MGP_AJ_G0021847
 protein coding gene Chr15:57755198-57793692 (-)
AKR/J MGP_AKRJ_G0021829
 protein coding gene Chr15:59362093-59397253 (-)
BALB/cJ MGP_BALBcJ_G0021854
 protein coding gene Chr15:57949942-57984894 (-)
C3H/HeJ MGP_C3HHeJ_G0021628
 protein coding gene Chr15:59472236-59507796 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022293
 protein coding gene Chr15:62372139-62409726 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019831
 protein coding gene Chr15:54757302-54792721 (-)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0021597
 protein coding gene Chr15:64601195-64642814 (-)
DBA/2J MGP_DBA2J_G0021721
 protein coding gene Chr15:57640173-57679321 (-)
FVB/NJ MGP_FVBNJ_G0021700
 protein coding gene Chr15:56692286-56726768 (-)
LP/J MGP_LPJ_G0021792
 protein coding gene Chr15:59984937-60025395 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021723
 protein coding gene Chr15:69553689-69594273 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022316
 protein coding gene Chr15:59734988-59771007 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0021202
 protein coding gene Chr15:59744181-59780585 (-)



Homology
more
  • Human Ortholog
    LRATD2, LRAT domain containing 2
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LRATD2, LRAT domain containing 2
  • Synonyms
    BCMP101, FAM84B, NSE2
  • Links
    NCBI Gene ID: 157638
    neXtProt AC: NX_Q96KN1
    UniProt: Q96KN1

  • Chr Location
    8q24.21; chr8:126552443-126558478 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    26 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    785
  • Tissues
    24
  • cDNA Data
    10
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 399603 NCBI Gene Model | MGI Sequence Detail 7110 C57BL/6J ±  kb
    transcript NM_001162926 RefSeq | MGI Sequence Detail 5563 C57BL/6  
    polypeptide NP_001156398 RefSeq | MGI Sequence Detail 310 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 11
      cDNA 10
      Other 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2683638, MGI:6286224
    References
    more
    • Summaries
      All 51
      Developmental Gene Expression 4
      Diseases 1
      Gene Ontology 1
      Phenotypes 26
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory