A530041M06Rik Gene Detail

Summary

• Symbol
  A530041M06Rik
• Name
  RIKEN cDNA A530041M06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3026943
  NCBI Gene: 100503209
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:104406636-104408923 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 45.62 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3026943	lncRNA gene	Chr3:104406636-104408923 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036988	sense intronic lncRNA gene	Chr3:105808378-105810658 (-)
A/J	MGP_AJ_G0036977	sense intronic lncRNA gene	Chr3:102446592-102448767 (-)
AKR/J	MGP_AKRJ_G0036924	sense intronic lncRNA gene	Chr3:104962845-104965126 (-)
BALB/cJ	MGP_BALBcJ_G0036967	sense intronic lncRNA gene	Chr3:102217460-102219747 (-)
C3H/HeJ	MGP_C3HHeJ_G0036654	sense intronic lncRNA gene	Chr3:105329721-105332008 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037480	sense intronic lncRNA gene	Chr3:109741542-109743823 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034532	sense intronic lncRNA gene	Chr3:98564159-98566457 (-)
CAST/EiJ	MGP_CASTEiJ_G0035842	sense intronic lncRNA gene	Chr3:104449666-104451946 (-)
CBA/J	MGP_CBAJ_G0036629	sense intronic lncRNA gene	Chr3:113497137-113499424 (-)
DBA/2J	MGP_DBA2J_G0036804	sense intronic lncRNA gene	Chr3:101692123-101694322 (-)
FVB/NJ	MGP_FVBNJ_G0036754	sense intronic lncRNA gene	Chr3:99622982-99625274 (-)
LP/J	MGP_LPJ_G0036851	sense intronic lncRNA gene	Chr3:107166606-107170177 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036762	sense intronic lncRNA gene	Chr3:119626375-119628662 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037598	sense intronic lncRNA gene	Chr3:104521532-104523745 (-)
PWK/PhJ	MGP_PWKPhJ_G0035534	sense intronic lncRNA gene	Chr3:101479073-101481413 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035343	sense intronic lncRNA gene	Chr3:102565973-102568237 (-)
WSB/EiJ	MGP_WSBEiJ_G0036042	sense intronic lncRNA gene	Chr3:105083738-105086027 (-)

Homology

• Gene Tree
  A530041M06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving A530041M06Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000104973 (Evidence)
• NCBI Gene
  100503209

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104973	Ensembl Gene Model | MGI Sequence Detail	2288	C57BL/6J
transcript	ENSMUST00000199690	Ensembl | MGI Sequence Detail	2288	Not Applicable

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;