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Ino80d Gene Detail
Summary
  • Symbol
    Ino80d
  • Name
    INO80 complex subunit D
  • Synonyms
    A430093A21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3027003
    NCBI Gene: 227195
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:63086960-63153693 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 31.89 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1123 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3027003
 protein coding gene Chr1:62997577-63153849 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016084
 protein coding gene Chr1:63080078-63237594 (-)
A/J MGP_AJ_G0016067
 protein coding gene Chr1:60859261-61013952 (-)
AKR/J MGP_AKRJ_G0016024
 protein coding gene Chr1:62533061-62693997 (-)
BALB/cJ MGP_BALBcJ_G0016022
 protein coding gene Chr1:60931304-61090719 (-)
C3H/HeJ MGP_C3HHeJ_G0015854
 protein coding gene Chr1:62806873-62972964 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016475
 protein coding gene Chr1:65508685-65679278 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014196
 protein coding gene Chr1:56981152-57127453 (-)
CAST/EiJ MGP_CASTEiJ_G0015437
 protein coding gene Chr1:62058608-62222399 (-)
CBA/J MGP_CBAJ_G0015826
 protein coding gene Chr1:67599027-67772198 (-)
DBA/2J MGP_DBA2J_G0015927
 protein coding gene Chr1:60264383-60418813 (-)
FVB/NJ MGP_FVBNJ_G0015930
 protein coding gene Chr1:59568363-59709844 (-)
LP/J MGP_LPJ_G0015999
 protein coding gene Chr1:63970732-64135064 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015950
 protein coding gene Chr1:70510775-70677243 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016522
 protein coding gene Chr1:62510307-62671583 (-)
PWK/PhJ MGP_PWKPhJ_G0015224
 protein coding gene Chr1:59642963-59797302 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015003
 protein coding gene Chr1:62014285-62168016 (-)
WSB/EiJ MGP_WSBEiJ_G0015499
 protein coding gene Chr1:62236497-62399327 (-)



Homology
more
  • Human Ortholog
    INO80D, INO80 complex subunit D
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    INO80D, INO80 complex subunit D
  • Links
    NCBI Gene ID: 54891
    neXtProt AC: NX_Q53TQ3
    UniProt: Q53TQ3

  • Chr Location
    2q33.3; chr2:205993721-206086303 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 1 genetic background
    18 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    22
  • GO References
    5
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    747
  • Tissues
    32
  • cDNA Data
    70
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 227195 NCBI Gene Model | MGI Sequence Detail 66734 C57BL/6J ±  kb
    transcript NM_001406701 RefSeq | MGI Sequence Detail 13993 C57BL/6  
    polypeptide Q66JY2 UniProt | EBI | MGI Sequence Detail 1021 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 72
      Genomic 2
      cDNA 70

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2388655, MGI:3707009
    References
    more
    • Summaries
      All 48
      Developmental Gene Expression 1
      Gene Ontology 5
      Phenotypes 18
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory