A530064N14Rik Gene Detail

Summary

• Symbol
  A530064N14Rik
• Name
  RIKEN cDNA A530064N14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3028068
  NCBI Gene: 402761
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:72594506-72595997 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3028068	lncRNA gene	Chr9:72594506-72595997 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002309	unclassified gene	Chr9:72865087-72866569 (+)
A/J	MGP_AJ_G0002286	unclassified gene	Chr9:70327681-70329173 (+)
AKR/J	MGP_AKRJ_G0002272	unclassified gene	Chr9:72015500-72016992 (+)
BALB/cJ	MGP_BALBcJ_G0002280	unclassified gene	Chr9:70036924-70038425 (+)
C3H/HeJ	MGP_C3HHeJ_G0002257	unclassified gene	Chr9:72505996-72507483 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002406	unclassified gene	Chr9:74770493-74771981 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002017	unclassified gene	Chr9:69818786-69820374 (+)
CAST/EiJ	MGP_CASTEiJ_G0002221	unclassified gene	Chr9:72830959-72832491 (+)
CBA/J	MGP_CBAJ_G0002251	unclassified gene	Chr9:77390700-77392191 (+)
DBA/2J	MGP_DBA2J_G0002254	unclassified gene	Chr9:70045164-70046656 (+)
FVB/NJ	MGP_FVBNJ_G0002263	unclassified gene	Chr9:69358361-69359853 (+)
LP/J	MGP_LPJ_G0002308	unclassified gene	Chr9:73083989-73085471 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002238	unclassified gene	Chr9:78482384-78483876 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002394	unclassified gene	Chr9:72158116-72159608 (+)
PWK/PhJ	MGP_PWKPhJ_G0002181	unclassified gene	Chr9:70321255-70323079 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002143	unclassified gene	Chr9:72452492-72453975 (+)
WSB/EiJ	MGP_WSBEiJ_G0002249	unclassified gene	Chr9:72086641-72088130 (+)

Homology

• Gene Tree
  A530064N14Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000104273 (Evidence)
• NCBI Gene
  402761

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104273	Ensembl Gene Model | MGI Sequence Detail	1492	C57BL/6J
transcript	AK080119	GenBank | ENA | DDBJ | MGI Sequence Detail	1492	C57BL/6J

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for A530064N14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86030	Chr9:72593340-72593357 (+)	-1,157 bp