Or5h25 Gene Detail

Summary

• Symbol
  Or5h25
• Name
  olfactory receptor family 5 subfamily H member 25
• Synonyms
  GA_x54KRFPKG5P-55338697-55337768, MOR113-7P, MOR113-7P, MOR183-7P, Olfr1540-ps1, Olfr193

• Feature Type
  protein coding gene
• IDs
  MGI:3030027
  NCBI Gene: 257972
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:58929988-58930996 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 34.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030027	protein coding gene	Chr16:58928287-58932244 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0022920	protein coding gene	Chr16:58324268-58325832 (-)
A/J	MGP_AJ_G0022886	protein coding gene	Chr16:55887183-55888055 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0022886	protein coding gene	Chr16:55994912-56005886 (-)
C3H/HeJ	MGP_C3HHeJ_G0022649	protein coding gene	Chr16:57800798-57804390 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0023335	protein coding gene	Chr16:59959969-59960975 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0022177	protein coding gene	Chr16:58089625-58090129 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0022728	protein coding gene	Chr16:55308563-55314526 (-)
LP/J	MGP_LPJ_G0022820	protein coding gene	Chr16:58124892-58136868 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0023350	protein coding gene	Chr16:57716383-57717389 (-)
PWK/PhJ	MGP_PWKPhJ_G0021916	protein coding gene	Chr16:55867781-55868871 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0021743	protein coding gene	Chr16:57446824-57447832 (-)
WSB/EiJ	MGP_WSBEiJ_G0022221	protein coding gene	Chr16:57745560-57746566 (-)

Homology

• Human Ortholog
  OR5H1, olfactory receptor family 5 subfamily H member 1

• Vertebrate Orthologs
  8

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  OR5H1, olfactory receptor family 5 subfamily H member 1
  
• Synonyms
  HSHTPCRX14, HTPCRX14
• Links
  HGNC:8346

  NCBI Gene ID: 26341

  neXtProt AC: NX_A6NKK0

  UniProt: A6NKK0

  
  
• Chr Location
  3q11.2; chr3:98130721-98138548 (+)  GRCh38

---

• Human Ortholog
  OR5H14, olfactory receptor family 5 subfamily H member 14
  
• Links
  HGNC:31286

  NCBI Gene ID: 403273

  neXtProt AC: NX_A6NHG9

  UniProt: A6NHG9

  
  
• Chr Location
  3q11.2; chr3:98147479-98156614 (+)  GRCh38

---

• Human Ortholog
  OR5H15, olfactory receptor family 5 subfamily H member 15
  
• Links
  HGNC:31287

  NCBI Gene ID: 403274

  neXtProt AC: NX_A6NDH6

  UniProt: A6NDH6

  
  
• Chr Location
  3q11.2; chr3:98166696-98169774 (+)  GRCh38

---

• Human Ortholog
  OR5H6, olfactory receptor family 5 subfamily H member 6
  
• Synonyms
  OR3-11
• Links
  HGNC:14767

  NCBI Gene ID: 79295

  neXtProt AC: NX_Q8NGV6

  UniProt: Q8NGV6

  
  
• Chr Location
  3q11.2; chr3:98263252-98265356 (+)  GRCh38

---

• Human Ortholog
  OR5H8, olfactory receptor family 5 subfamily H member 8 (gene/pseudogene)
  
• Synonyms
  OR3-7, OR5H8P
• Links
  HGNC:14773

  NCBI Gene ID: 79289

  UniProt: P0DN80

  
  
• Chr Location
  3q11.2; chr3:98306752-98312843 (+)  GRCh38

---

• MGI Vertebrate Homology
  Or5h25 stringent orthology
  5 human;1 mouse;3 rat
  
• HCOP
  vertebrate homology predictions: OR5H1, OR5H14, OR5H15, OR5H6, OR5H8
• Gene Tree
  Or5h25
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  20 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  6
• GO References
  2

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS28245.1

• Ensembl
  ENSMUSG00000060057 (Evidence)
• NCBI Gene
  257972

Representative Sequences			Length	Strain/Species
genomic	257972	NCBI Gene Model | MGI Sequence Detail	1009	C57BL/6J
transcript	NM_001011791	RefSeq | MGI Sequence Detail	1009	C57BL/6
polypeptide	NP_001011791	RefSeq | MGI Sequence Detail	309	C57BL/6

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR017452 GPCR, rhodopsin-like, 7TM
  IPR000276 G protein-coupled receptor, rhodopsin-like
  IPR050516 Olfactory G-protein coupled receptor
  IPR000725 Olfactory receptor

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3031374, MGI:7276846

References

• Summaries
  All 14

  Gene Ontology 2

  Phenotypes 1
• Earliest
  J:74521 Zhang X, et al., The olfactory receptor gene superfamily of the mouse. Nat Neurosci. 2002 Feb;5(2):124-33
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42