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Or5c1 Gene Detail
Summary
  • Symbol
    Or5c1
  • Name
    olfactory receptor family 5 subfamily C member 1
  • Synonyms
    GA_x6K02T2NLDC-34015743-34016726, MOR178-1, Olfr368
  • Feature Type
    protein coding gene
  • IDs
    MGI:3030202
    NCBI Gene: 258371
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr2:37221761-37222744 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 24.19 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    72 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3030202
 protein coding gene Chr2:37216527-37222784 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025691
 protein coding gene Chr2:36006866-36007849 (+)
A/J MGP_AJ_G0025668
 protein coding gene Chr2:34533831-34534814 (+)
AKR/J MGP_AKRJ_G0025638
 protein coding gene Chr2:35690825-35691808 (+)
BALB/cJ MGP_BALBcJ_G0025663
 protein coding gene Chr2:34614753-34615736 (+)
C3H/HeJ MGP_C3HHeJ_G0025424
 protein coding gene Chr2:35619657-35620640 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026109
 protein coding gene Chr2:37068584-37069567 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023514
 protein coding gene Chr2:33220162-33221145 (+)
CAST/EiJ MGP_CASTEiJ_G0024887
 protein coding gene Chr2:35524500-35525483 (+)
CBA/J MGP_CBAJ_G0025403
 protein coding gene Chr2:38446417-38447400 (+)
DBA/2J MGP_DBA2J_G0025535
 protein coding gene Chr2:34294198-34295181 (+)
FVB/NJ MGP_FVBNJ_G0025497
 protein coding gene Chr2:34174173-34175156 (+)
LP/J MGP_LPJ_G0025622
 protein coding gene Chr2:35919606-35920589 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025528
 protein coding gene Chr2:38028635-38029618 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026167
 protein coding gene Chr2:35579143-35580126 (+)
PWK/PhJ MGP_PWKPhJ_G0024629
 protein coding gene Chr2:34189527-34190510 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024434
 protein coding gene Chr2:35691440-35692423 (+)
WSB/EiJ MGP_WSBEiJ_G0024955
 protein coding gene Chr2:35764376-35765359 (+)



Homology
more
  • Human Ortholog
    OR5C1, olfactory receptor family 5 subfamily C member 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    OR5C1, olfactory receptor family 5 subfamily C member 1
  • Synonyms
    OR5C2P, OR9-31, OR9-F
  • Links
    NCBI Gene ID: 392391
    neXtProt AC: NX_Q8NGR4
    UniProt: Q8NGR4

  • Chr Location
    9q33.2; chr9:122788933-122789895 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    1
  • cDNA Data
    4
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 258371 NCBI Gene Model | MGI Sequence Detail 984 C57BL/6J ±  kb
transcript NM_146374 RefSeq | MGI Sequence Detail 984 Not Specified  
polypeptide NP_666486 RefSeq | MGI Sequence Detail 327 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR017452 GPCR, rhodopsin-like, 7TM
    IPR000276 G protein-coupled receptor, rhodopsin-like
    IPR050516 Olfactory G-protein coupled receptor
    IPR000725 Olfactory receptor
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
Other
Accession IDs
less
MGI:7277001
References
more
  • Summaries
    All 15
    Developmental Gene Expression 2
    Gene Ontology 2
  • Earliest
    J:74521 Zhang X, et al., The olfactory receptor gene superfamily of the mouse. Nat Neurosci. 2002 Feb;5(2):124-33
  • Latest
    J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory