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Or5d39 Gene Detail
Summary
  • Symbol
    Or5d39
  • Name
    olfactory receptor family 5 subfamily D member 39
  • Synonyms
    GA_x6K02T2Q125-49641892-49640942, MOR174-16, Olfr1167
  • Feature Type
    protein coding gene
  • IDs
    MGI:3031001
    NCBI Gene: 258291
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr2:87979328-87980427 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 49.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    168 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3031001
 protein coding gene Chr2:87976494-87985537 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026045
 protein coding gene Chr2:89215192-89216318 (-)
A/J MGP_AJ_G0026011
 protein coding gene Chr2:85673984-85675150 (-)
AKR/J MGP_AKRJ_G0025986
 protein coding gene Chr2:88097540-88098267 (-)
BALB/cJ MGP_BALBcJ_G0026017
 protein coding gene Chr2:85888047-85889213 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0026465
 protein coding gene Chr2:92233705-92235304 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023857
 protein coding gene Chr2:82314372-82323339 (-)
CAST/EiJ MGP_CASTEiJ_G0025234
 protein coding gene Chr2:88700782-88701449 (-)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0025883
 protein coding gene Chr2:85234829-85235905 (-)
FVB/NJ MGP_FVBNJ_G0025847
 protein coding gene Chr2:84318217-84318944 (-)
LP/J MGP_LPJ_G0025984
 protein coding gene Chr2:89305087-89306163 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025873
 protein coding gene Chr2:98222277-98222873 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026518
 protein coding gene Chr2:88276927-88277657 (-)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0024779
 protein coding gene Chr2:88059438-88060333 (-)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 258291 NCBI Gene Model | MGI Sequence Detail 1100 C57BL/6J ±  kb
transcript NM_146294 RefSeq | MGI Sequence Detail 1100 C57BL/6  
polypeptide NP_666406 RefSeq | MGI Sequence Detail 316 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR017452 GPCR, rhodopsin-like, 7TM
    IPR000276 G protein-coupled receptor, rhodopsin-like
    IPR000725 Olfactory receptor
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 2
Other
Accession IDs
less
MGI:7276439
References
more
  • Summaries
    All 17
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:74521 Zhang X, et al., The olfactory receptor gene superfamily of the mouse. Nat Neurosci. 2002 Feb;5(2):124-33
  • Latest
    J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory