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Or5d40 Gene Detail
Summary
  • Symbol
    Or5d40
  • Name
    olfactory receptor family 5 subfamily D member 40
  • Synonyms
    GA_x6K02T2Q125-49669483-49670421, MOR174-13, Olfr1168
  • Feature Type
    protein coding gene
  • IDs
    MGI:3031002
    NCBI Gene: 258524
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr2:88015223-88016161 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 49.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    184 from dbSNP Build 142
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3031002
 protein coding gene Chr2:88012224-88017263 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026046
 protein coding gene Chr2:89258096-89259034 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0035435
 protein coding gene ChrX:60233829-60234767 (-)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0025235
 protein coding gene Chr2:88754493-88755912 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0025885
 protein coding gene Chr2:85382201-85391406 (-)
FVB/NJ MGP_FVBNJ_G0025849
 protein coding gene Chr2:84385742-84386680 (+)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0026519
 protein coding gene Chr2:88289625-88290563 (-)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0024780
 protein coding gene Chr2:88123817-88124755 (-)
WSB/EiJ MGP_WSBEiJ_G0025304
 protein coding gene Chr2:88876740-88877783 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 258524 NCBI Gene Model | MGI Sequence Detail 939 C57BL/6J ±  kb
transcript NM_146531 RefSeq | MGI Sequence Detail 939 Not Specified  
polypeptide NP_666742 RefSeq | MGI Sequence Detail 312 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR017452 GPCR, rhodopsin-like, 7TM
    IPR000276 G protein-coupled receptor, rhodopsin-like
    IPR000725 Olfactory receptor
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:7276440
References
more
  • Summaries
    All 18
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:74521 Zhang X, et al., The olfactory receptor gene superfamily of the mouse. Nat Neurosci. 2002 Feb;5(2):124-33
  • Latest
    J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory