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Or4f17-ps1 Pseudogene Detail
Summary
  • Symbol
    Or4f17-ps1
  • Name
    olfactory receptor family 4 subfamily F member 17, pseudogene 1
  • Synonyms
    GA_x6K02T2Q125-72578807-72579745, MOR245-24P, Olfr1293-ps, OTTMUSG00000015076
Location &
Maps
more
  • Sequence Map
    Chr2:111357649-111358587 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 56.75 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    153 from dbSNP Build 142
  • Strain Annotations
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3031127
 polymorphic pseudogene Chr2:111355548-111363624 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    OR4F17, olfactory receptor family 4 subfamily F member 17
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    OR4F17, olfactory receptor family 4 subfamily F member 17
  • Synonyms
    OR4F11P, OR4F18, OR4F19, OR4F5
  • Links
    NCBI Gene ID: 81099
    neXtProt AC: NX_Q8NGA8
    UniProt: Q8NGA8

  • Chr Location
    19p13.3; chr19:107104-117102 (+)  GRCh38
  • Human Ortholog
    OR4F4, olfactory receptor family 4 subfamily F member 4
  • Synonyms
    OLA-7501, OR4F18
  • Links
    NCBI Gene ID: 26682
    neXtProt AC: NX_Q96R69
    UniProt: Q96R69

  • Chr Location
    15q26.3; chr15:101922042-101923113 (-)  GRCh38
  • Human Ortholog
    OR4F5, olfactory receptor family 4 subfamily F member 5
  • Links
    NCBI Gene ID: 79501
    neXtProt AC: NX_Q8NH21
    UniProt: Q8NH21

  • Chr Location
    1p36.33; chr1:65419-71585 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Radiation induced
    2
  • Genomic Mutations
    3 involving Or4f17-ps1
  • Find Mice (IMSR)
    12 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    12
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 623583 NCBI Gene Model | MGI Sequence Detail 939 C57BL/6J ±  kb
transcript NM_001429984 RefSeq | MGI Sequence Detail 3628 C57BL/6  
polypeptide NP_001416913 RefSeq | MGI Sequence Detail 326 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR017452 GPCR, rhodopsin-like, 7TM
    IPR000276 G protein-coupled receptor, rhodopsin-like
    IPR050427 Human Olfactory Receptors
    IPR000725 Olfactory receptor
  • GlyGen
    A0A1L1SVB5 2 sites, 2 N-linked glycans (2 sites)
Molecular
Reagents
less

  • Microarray probesets 1
Other
Accession IDs
less
MGI:3651414, MGI:7276570
References
more
  • Summaries
    All 17
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory