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Trim30d Gene Detail
Summary
  • Symbol
    Trim30d
  • Name
    tripartite motif-containing 30D
  • Synonyms
    TRIM30-3, Trim79
  • Feature Type
    protein coding gene
  • IDs
    MGI:3035181
    NCBI Gene: 209387
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:104119221-104157056 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 55.69 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1173 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3035181
 protein coding gene Chr7:104119221-104157062 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032717
 protein coding gene Chr7:107624990-107652197 (-)
A/J MGP_AJ_G0032692
 protein coding gene Chr7:104809571-104834699 (-)
AKR/J MGP_AKRJ_G0032625
 protein coding gene Chr7:107431080-107482457 (-)
BALB/cJ MGP_BALBcJ_G0032702
 protein coding gene Chr7:104527144-104553037 (-)
C3H/HeJ MGP_C3HHeJ_G0032413
 protein coding gene Chr7:107681431-107713429 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033198
 protein coding gene Chr7:111818508-111858738 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0031740
 protein coding gene Chr7:99416847-99456166 (-)
CBA/J MGP_CBAJ_G0032381
 protein coding gene Chr7:115644991-115651100 (-)
DBA/2J MGP_DBA2J_G0032535
 protein coding gene Chr7:103125286-103156104 (-)
FVB/NJ MGP_FVBNJ_G0032487
 protein coding gene Chr7:102837984-102873039 (-)
LP/J MGP_LPJ_G0032628
 protein coding gene Chr7:108945643-108979663 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032520
 protein coding gene Chr7:117085726-117116828 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033225
 protein coding gene Chr7:106618208-106655998 (-)
PWK/PhJ MGP_PWKPhJ_G0031456
 protein coding gene Chr7:96086368-96176002 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031300
 protein coding gene Chr7:93707530-93733889 (-)
WSB/EiJ MGP_WSBEiJ_G0031857
 protein coding gene Chr7:107281096-107296011 (-)



Homology
more
  • Human Ortholog
    TRIM5, tripartite motif containing 5
  • Vertebrate Orthologs
    8
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM5, tripartite motif containing 5
  • Synonyms
    RNF88, TRIM5alpha
  • Links
    NCBI Gene ID: 85363
    neXtProt AC: NX_Q9C035
    UniProt: Q9C035

  • Chr Location
    11p15.4; chr11:5588635-5938619 (-)  GRCh38
Human Diseases
less
  • References
    4 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    117 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    31
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    28
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000057596 Ensembl Gene Model | MGI Sequence Detail 37836 C57BL/6J ±  kb
transcript ENSMUST00000033211 Ensembl | MGI Sequence Detail 1904 Not Applicable  
polypeptide ENSMUSP00000033211 Ensembl | MGI Sequence Detail 497 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 28
    cDNA 28

    Microarray probesets 3
References
more
  • Summaries
    All 137
    Diseases 4
    Gene Ontology 2
    Phenotypes 117
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:353266 de Veij Mestdagh CF, et al., Torpor induces reversible tau hyperphosphorylation and accumulation in mice expressing human tau. Acta Neuropathol Commun. 2024 Jun 4;12(1):86
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory