AA543186 Gene Detail

Summary

• Symbol
  AA543186
• Name
  expressed sequence AA543186

• Feature Type
  lncRNA gene
• IDs
  MGI:3035233
  NCBI Gene: 100272219
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:25217462-25222583 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 17.17 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  232 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3035233	lncRNA gene	Chr2:25217462-25222583 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  1 strains or lines available

Expression

• cDNA Data
  6

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• NCBI Gene
  100272219

Representative Sequences			Length	Strain/Species
genomic	100272219	NCBI Gene Model | MGI Sequence Detail	5122	C57BL/6J
transcript	NR_027448	RefSeq | MGI Sequence Detail	1696	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for AA543186:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22970	Chr2:25222536-25222614 (-)	8 bp
Tssr22969	Chr2:25222493-25222507 (-)	83 bp