E130307A14Rik Gene Detail

Summary

• Symbol
  E130307A14Rik
• Name
  RIKEN cDNA E130307A14 gene
• Synonyms
  betaFaar

• Feature Type
  lncRNA gene
• IDs
  MGI:3036287
  NCBI Gene: 327744
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr10:39497407-39608003 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 20.88 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2603 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3036287	lncRNA gene	Chr10:39497407-39608012 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015134	unclassified non-coding RNA gene	Chr10:38140057-38255407 (-)
A/J	MGP_AJ_G0015108	unclassified non-coding RNA gene	Chr10:37121523-37232848 (-)
AKR/J	MGP_AKRJ_G0015071	unclassified non-coding RNA gene	Chr10:37634699-37751245 (-)
BALB/cJ	MGP_BALBcJ_G0015071	unclassified non-coding RNA gene	Chr10:37164966-37276906 (-)
C3H/HeJ	MGP_C3HHeJ_G0014894	unclassified non-coding RNA gene	Chr10:37963070-38078308 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015527	unclassified non-coding RNA gene	Chr10:39306157-39424509 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013273	unclassified non-coding RNA gene	Chr10:35107914-35216852 (-)
CAST/EiJ	MGP_CASTEiJ_G0014448	unclassified non-coding RNA gene	Chr10:38116791-38237794 (-)
CBA/J	MGP_CBAJ_G0014873	unclassified non-coding RNA gene	Chr10:41123476-41249179 (-)
DBA/2J	MGP_DBA2J_G0014966	unclassified non-coding RNA gene	Chr10:36641823-36753600 (-)
FVB/NJ	MGP_FVBNJ_G0014977	unclassified non-coding RNA gene	Chr10:36146886-36258388 (-)
LP/J	MGP_LPJ_G0015048	unclassified non-coding RNA gene	Chr10:38108485-38224451 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015004	unclassified non-coding RNA gene	Chr10:41972464-42090233 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015566	unclassified non-coding RNA gene	Chr10:37625504-37740112 (-)
PWK/PhJ	MGP_PWKPhJ_G0014240	unclassified non-coding RNA gene	Chr10:36482442-36597720 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014028	unclassified non-coding RNA gene	Chr10:37417075-37537146 (-)
WSB/EiJ	MGP_WSBEiJ_G0014551	unclassified non-coding RNA gene	Chr10:37901192-38016841 (-)

Homology

• Gene Tree
  E130307A14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  12
• Chemically induced (other)
  1
• Gene trapped
  10
• Radiation induced
  1
• Genomic Mutations
  2 involving E130307A14Rik
• Find Mice (IMSR)
  7 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  26

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  57
• RefSeq
  2

• Ensembl
  ENSMUSG00000087177 (Evidence)
• NCBI Gene
  327744

Representative Sequences			Length	Strain/Species
genomic	327744	NCBI Gene Model | MGI Sequence Detail	110597	C57BL/6J
transcript	NR_038037	RefSeq | MGI Sequence Detail	1664	C57BL/6

Molecular
Reagents

• All nucleic 26

  cDNA 26

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2143592

References

• Summaries
  All 28

  Phenotypes 11
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:340201 Zhang F, et al., The long non-coding RNA betaFaar regulates islet beta-cell function and survival during obesity in mice. Nat Commun. 2021 Jun 28;12(1):3997

TSS for E130307A14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97342	Chr10:39607970-39608007 (-)	14 bp
Tssr97341	Chr10:39607914-39607925 (-)	83 bp
Tssr97340	Chr10:39607798-39607878 (-)	165 bp
Tssr97339	Chr10:39605835-39605840 (-)	2,165 bp
Tssr97338	Chr10:39568312-39568315 (-)	39,689 bp
Tssr97337	Chr10:39514758-39514761 (-)	93,243 bp